| DPOGS203391 | ||
|---|---|---|
| Transcript | DPOGS203391-TA | 918 bp |
| Protein | DPOGS203391-PA | 305 aa |
| Genomic position | DPSCF300003 + 845650-846567 | |
| RNAseq coverage | 16x (Rank: top 81%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008815 | 6e-94 | 55.56% | |
| Bombyx | BGIBMGA002052-TA | 2e-88 | 48.20% | |
| Drosophila | CG3731-PB | 7e-64 | 38.51% | |
| EBI UniRef50 | UniRef50_P31930 | 4e-62 | 37.99% | Cytochrome b-c1 complex subunit 1, mitochondrial n=91 Tax=Eukaryota RepID=QCR1_HUMAN |
| NCBI RefSeq | XP_309120.3 | 2e-65 | 38.93% | AGAP000935-PA [Anopheles gambiae str. PEST] |
| NCBI nr blastp | gi|147902934 | 9e-66 | 38.64% | ubiquinol-cytochrome c reductase core protein I [Xenopus laevis] |
| NCBI nr blastx | gi|260809835 | 4e-63 | 40.94% | hypothetical protein BRAFLDRAFT_287788 [Branchiostoma floridae] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0046872 | 2.2e-53 | metal ion binding | |
| GO:0003824 | 2.2e-53 | catalytic activity | ||
| GO:0006508 | 6.1e-20 | proteolysis | ||
| GO:0004222 | 6.1e-20 | metalloendopeptidase activity | ||
| GO:0008270 | 6.1e-20 | zinc ion binding | ||
| KEGG pathway | xla:379401 | 1e-66 | ||
| K00414 (QCR1, UQCRC1) | maps-> | Huntington's disease | ||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Cardiac muscle contraction | ||||
| Parkinson's disease | ||||
| InterPro domain | [92-304] IPR011237 | 2.2e-53 | Peptidase M16, core | |
| [93-305] IPR011249 | 4.4e-30 | Metalloenzyme, LuxS/M16 peptidase-like, metal-binding | ||
| [44-218] IPR007863 | 6.1e-20 | Peptidase M16, C-terminal | ||
| Orthology group | MCL34498 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS203391-TA
ATGCTTAAGCATGATGAATCAACAGTAAATATATTATATGACTATTTACATTCAACAGCGTTCCAAGGTACCCAGTTAGGACAAACTATTATGGGAACTAGTAACAACTTGTGTAAATTTCAAATGCCTTCTGTTAGAAATCTTGTAAAGAAAATGTTTATTCCACAAAGAACTGTATTAGCTGCCGTTGGTGGTGTCACTCACGATACGATGGTGAACATTGGGAATAAATATTTTAGGAAAACTAAAGACCCCAAATGTATCTTTTTAGGCCCTTGTAGATATACAGGATCCGAAATATCCTACAGAGATGATTCAATGCCCATGGGGCATGTAGCGATAGCTGTGGAAGGCCCTCCCTTTTCCAGTAAAGATAAAATCTTTATGGATCTAGCTGCCTCATACATAGGGGGTTGGGACACCTCTCAACCTGGCGGAACAAACCACGGAACTTACACCGCATTGATGGGCTCAGCAGGACGTAATTGCGAGTCTTATAAAACTTTCCAATTTGTCTATAACGACACCAGTCTATGGGGAGCACAATTTATATCACCGAGAATTGATTTAGACGACATGTTATACATCATTCAGGACACTTGGATGAGATTATGTGACTTGATTACTGACGGTGAACTAATAAGGCCCAAAAGTGAATTAAAATCAAAGATTTTGATGCAAAATCAAAGTACAGAAAAAGCTTGTCACGATATCGGACAACACCTACTGCGAACTGGCAATCGACCGACTATTGCTGATAGATTTCGTGAAATTGATAATATAACTGCTAAGCAGTTAAAAAAGGTTTGCGATAAATACATATATGATAGATGTCCAGTGGTAGTGGGAATTGGTTCCATAGAATGCTTATATCCGTATACAAATGTAAGAGATGCCATGCGTTGGCTAAGAGTGTAA
>DPOGS203391-PA
MLKHDESTVNILYDYLHSTAFQGTQLGQTIMGTSNNLCKFQMPSVRNLVKKMFIPQRTVLAAVGGVTHDTMVNIGNKYFRKTKDPKCIFLGPCRYTGSEISYRDDSMPMGHVAIAVEGPPFSSKDKIFMDLAASYIGGWDTSQPGGTNHGTYTALMGSAGRNCESYKTFQFVYNDTSLWGAQFISPRIDLDDMLYIIQDTWMRLCDLITDGELIRPKSELKSKILMQNQSTEKACHDIGQHLLRTGNRPTIADRFREIDNITAKQLKKVCDKYIYDRCPVVVGIGSIECLYPYTNVRDAMRWLRV-