Monarch geneset OGS2.0

DPOGS203397
TranscriptDPOGS203397-TA576 bp
ProteinDPOGS203397-PA191 aa
Genomic positionDPSCF300003 + 931757-932599
RNAseq coverage1905x (Rank: top 7%)
Annotation
HeliconiusHMEL0166329e-9387.96% 
BombyxBGIBMGA012295-TA1e-10697.38% 
DrosophilaCdc42-PA2e-10192.67% 
EBI UniRef50UniRef50_P609538e-9891.62%Cell division control protein 42 homolog n=904 Tax=root RepID=CDC42_HUMAN
NCBI RefSeqXP_002429222.14e-10294.24%RAC GTPase, putative [Pediculus humanus corporis]
NCBI nr blastpgi|2420174926e-10194.24%RAC GTPase, putative [Pediculus humanus corporis]
NCBI nr blastxgi|2420174922e-9994.24%RAC GTPase, putative [Pediculus humanus corporis]
Group
Gene OntologyGO:00072645.4e-129small GTPase mediated signal transduction
GO:00056225.4e-129intracellular
GO:00055255.4e-129GTP binding
GO:00160202e-19membrane
GO:00071652e-19signal transduction
GO:00061842e-19GTP catabolic process
GO:00039242e-19GTPase activity
GO:00150312e-13protein transport
KEGG pathwayphu:Phum_PHUM4244101e-101 
 K04393 (CDC42)maps-> Axon guidance
    Pathogenic Escherichia coli infection
    Regulation of actin cytoskeleton
    MAPK signaling pathway
    Fc gamma R-mediated phagocytosis
    Pathways in cancer
    Shigellosis
    Chemokine signaling pathway
    Leukocyte transendothelial migration
    Neurotrophin signaling pathway
    T cell receptor signaling pathway
    Focal adhesion
    GnRH signaling pathway
    Tight junction
    Bacterial invasion of epithelial cells
    Adherens junction
    MAPK signaling pathway - yeast
    Renal cell carcinoma
    Pancreatic cancer
    Endocytosis
    Epithelial cell signaling in Helicobacter pylori infection
    VEGF signaling pathway
InterPro domain[6-179] IPR0035785.4e-129Small GTPase superfamily, Rho type
[5-175] IPR0018063.8e-54Small GTPase superfamily
[1-157] IPR0052256.9e-43Small GTP-binding protein domain
[1-179] IPR0208492e-19Small GTPase superfamily, Ras type
[4-179] IPR0035792e-13Small GTPase superfamily, Rab type
Orthology groupMCL11704 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS203397-TA
ATGCAAACTATAAAATGTGTTGTGGTGGGAGATGGAGCGGTCGGTAAAACTTGCTTGCTCATAAGCTATACAACAAACAAGTTCCCATCGGAGTATGTGCCGACGGTGTTTGATAACTATGCTGTCACCGTTATGATTGGTGGGGAACCCTACACTCTTGGACTTTTTGATACTGCAGGTCAGGAAGATTATGATAGACTGAGACCTCTAAGTTATCCGCAAACAGATGTTTTCCTTGTATGCTTCAGTGTTGTAAGTCCCAGTTCGTTTGAAAATGTTAAAGAAAAGTGGGTGCCGGAGATTACTCATCATCAACAGAAGACACCGTTTCTCCTTGTAGGGACTCAGATTGATTTAAGAGATGATCCCGGGACTATGGAGAAACTGGCTAAGATCAAACAAAAGCCGGTGTCGTTTGAACAAGGAGAGAAATTAGCTAAGGAGTTGAAAGCAGTTAAATATGTGGAGTGCTCAGCTCTAACCCAGAAAGGGCTAAAGAATGTGTTTGACGAGGCCATACTGGCAGCCCTGGAACCTCCGGAACCTGTCAAGAAAAAGATATGCGTCCTGCTGTAA

Protein sequence:

>DPOGS203397-PA
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPGTMEKLAKIKQKPVSFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPVKKKICVLL-