Monarch geneset OGS2.0

DPOGS203670
TranscriptDPOGS203670-TA1725 bp
ProteinDPOGS203670-PA574 aa
Genomic positionDPSCF300010 - 2309446-2312711
RNAseq coverage239x (Rank: top 43%)
Annotation
HeliconiusHMEL0133440.093.21% 
BombyxBGIBMGA003465-TA0.083.92% 
DrosophilaTH1-PA0.068.63% 
EBI UniRef50UniRef50_Q241340.068.63%Negative elongation factor D n=23 Tax=Pancrustacea RepID=NELFD_DROME
NCBI RefSeqNP_001123224.10.072.82%negative elongation factor D [Nasonia vitripennis]
NCBI nr blastpgi|3071846500.074.87%Negative elongation factor D [Camponotus floridanus]
NCBI nr blastxgi|3071846500.074.87%Negative elongation factor D [Camponotus floridanus]
Group
Gene OntologyGO:00458926.8e-261negative regulation of transcription, DNA-dependent
GO:00056346.8e-261nucleus
KEGG pathway 
InterPro domain[20-574] IPR0069420TH1 protein
Orthology groupMCL13411 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS203670-TA
ATGCCTAGCCAATACGACGAGGAACGTGTTTGGGAGGGACAAAATCAAAACCACTACGAAGATGATGGCACTGAAGATGTTATTGATAACCCAGAAGAAGTATTACAAGAGTGCCTTGAAAAATTCAAAACCCCAGACTACATTATGGAACCTGGTATATTCGGTCAGCTGAAACGGTACTTTCAAGCAGGGGGAAATCCAGAACAAGTAATTGAACAATTGTCAATAAACTACAATGCTGTTGCTCAGATGGCAAACTTGTTGGCTGAATGGCTTATACTTGGAGGAGTAAAAGTGACTGAAGTGCAAGCAATGGTGGAGAACCATTTGAAAGATATGATATTGAAAACTTTCGATCCAAAAAAAGCTGATACAATATTTACAGAAGAGGGTGAAACACCTGCGTGGTTGACTGAAATGATTGAACATCCTACTTGGAGGTCACTTATTTATAGACTAGCCGAAGAGTACCCCGACTGTTTAATGCTGAATTTCACTATAAAGTTAATATCAGATGCTGGCTTTCAAGGTGAAATTACAAGTATATCTACAGCAGCACAACAAATTGAAGTGTTCTCTAGAGTTCTGAAGTCGGCAATTGTTGGTTTTTTGCAAAGTTCAGACCAATGGCAGAACAGTGTTACGGAGTGTGCTAAAATGGTGTGTCATGGAGCCCACACTTATGTTTATAGTCAAGTCATTGTACACATTCTCTCCCAAGAACCACGAGGGGGTGCAATTATGAAAAGATTGAACCAAGAAATAACTCGATGTGCTCAAGAAAGTGGTCACGATGTCACTCCCATAACGCTAGCGTTAACCCCTGGCGAGTCTTGGCGCAATGCTCGTACAGCATTGGCGGCCATGTTATCCAGAGGAGCTTTAAACCCAGCTGACATAACAGTACTATTTCGAGCATACACACAACCTGATCCACCTCCTGTACATTTATTACGGATTCCACATTTCTTAGAACTACTTGTGGACTCATTATTCAAATCAGGAAGCAAACTTAATCCTGAACATAAACCCAAATATATGCATTTGTTAGCATATGCTGCTAGTGTTTGTGAAGGTCCAGCCCCCGGTAGACCAATTAAAGATGAGTTAAAGGCAACAATGCAAGCTATTGAAAAAATTCATACAGTTTGCAGTAGTTCGGCGAGTTCTAGCGAACTCTTAGCTGAGCTACCAGCCCTTTACCATTGTATAAGATTCCCAGTAGTAGGAATGGGTGTTCTGGTGTGGGTGGAGGGTGTAGTAACCGAGAAGTCTTACTTCAAATTGTGCACTGAACATTGTCCCGTCCACCTGGCACTGCTTGACGAAGTCGCTTCCTGCCATCCTCTACTACATCACAGACTTTTAAAGCTACTAGTACAGTTGTTTGAATCTCCACAAGATGAATTGGAGATTTTAGTTCAGTTGGAATTAAGGAAAATGCTGTTAGACCGTATGGTGAATTTGCTAAGTCGTGGCTGCGTCGTCCCAGTGCTGCAATATATCAAGGCATGTTGGCAGAGAGATGACACTGATATATCACTTATAAGATATTTTATAACAGAGGTTCTTGATGCAATAGCTCCACCTTACACGCCTGAATTTGTACAACTCGTGTTACCAATGGTGGAAAATGAGGATATAACTGGAACAATGAGAGCTGAAGGTGAAAAAGATCCAGTATCTGAATTTAGAGTTCACTGCAAAGCACATGTAGTGGTTTGA

Protein sequence:

>DPOGS203670-PA
MPSQYDEERVWEGQNQNHYEDDGTEDVIDNPEEVLQECLEKFKTPDYIMEPGIFGQLKRYFQAGGNPEQVIEQLSINYNAVAQMANLLAEWLILGGVKVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEITSISTAAQQIEVFSRVLKSAIVGFLQSSDQWQNSVTECAKMVCHGAHTYVYSQVIVHILSQEPRGGAIMKRLNQEITRCAQESGHDVTPITLALTPGESWRNARTALAAMLSRGALNPADITVLFRAYTQPDPPPVHLLRIPHFLELLVDSLFKSGSKLNPEHKPKYMHLLAYAASVCEGPAPGRPIKDELKATMQAIEKIHTVCSSSASSSELLAELPALYHCIRFPVVGMGVLVWVEGVVTEKSYFKLCTEHCPVHLALLDEVASCHPLLHHRLLKLLVQLFESPQDELEILVQLELRKMLLDRMVNLLSRGCVVPVLQYIKACWQRDDTDISLIRYFITEVLDAIAPPYTPEFVQLVLPMVENEDITGTMRAEGEKDPVSEFRVHCKAHVVV-