MonarchBase - Protein-coding gene

DPOGS203690
Transcript	DPOGS203690-TA	5688 bp
Protein	DPOGS203690-PA	1895 aa
Genomic position	DPSCF300010 - 2019204-2027209
RNAseq coverage	854x (Rank: top 15%)

Annotation
*Heliconius*	HMEL013314	87.28%
*Bombyx*	BGIBMGA003484-TA	89.44%
*Drosophila*	RpII215-PA	78.65%
EBI UniRef50	UniRef50_P04052	78.65%	DNA-directed RNA polymerase II subunit RPB1 n=3048 Tax=root RepID=RPB1_DROME
NCBI RefSeq	XP_001355562.1	79.01%	RpII215 [Drosophila pseudoobscura pseudoobscura]
NCBI nr blastp	gi\|324120588	87.72%	RNA polymerase II largest subunit [Stenopsyche marmorata]
NCBI nr blastx	gi\|383857287	85.90%	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Megachile rotundata]

Group
Gene Ontology	GO:0003899	3.5e-196	DNA-directed RNA polymerase activity
	GO:0003677	3.5e-196	DNA binding
	GO:0006351	3.5e-196	transcription, DNA-dependent
KEGG pathway	dpo:Dpse_GA13798	0.0
	K03006 (RPB1)	maps->	Huntington's disease
			Purine metabolism
			Pyrimidine metabolism
			RNA polymerase
InterPro domain	[236-539] IPR006592	3.5e-196	RNA polymerase, N-terminal
	[12-344] IPR007080	4.1e-113	RNA polymerase Rpb1, domain 1
	[820-1417] IPR007081	2.6e-102	RNA polymerase Rpb1, domain 5
	[346-509] IPR000722	9.5e-69	RNA polymerase, alpha subunit
	[886-1069] IPR007075	3.4e-68	RNA polymerase Rpb1, domain 6
	[1154-1290] IPR007073	3.3e-53	RNA polymerase Rpb1, domain 7
	[514-682] IPR007066	5.6e-48	RNA polymerase Rpb1, domain 3
	[712-813] IPR007083	1.2e-37	RNA polymerase Rpb1, domain 4
Orthology group	MCL13412		Single-copy universal gene

Nucleotide sequence:

>DPOGS203690-TA
ATGGCGACCACGAATGATTCGAAGGCGCCTTTGCGCCAAGTTAAAAGAGTACAATTTGGCATTTTATCTCCAGATGAAATCCGTCGCATGTCAGTCACAGAAGGGGGAATTCGTTTCCCAGAAACAATGGAAGGGGGAAGGCCCAAACTTGGTGGGCTTATGGATCCTCGACAAGGGGTGATAGACAGAAGTTCTCGATGCCAAACCTGCGCTGGAAATATGACAGAATGCCCTGGACACTTTGGCCACATTGATTTAGCCAAACCAGTATTTCATATTGGTTTTATTACCAAAACAATTAAAGTATTAAGATGTGTTTGTTTTTATTGCTCAAAATTACTTGTCAGTCCTACAAATCCAAAAATCAAAGAAGTGGTAATGAAATCTAAAGGTCAACCACGTAAAAGGTTGACTTATGTATATGACCTTTGCAAGGGTAAAAATATTTGTGAGGGTGGAGAAGATATGGATATTGGAAAAGAAGGGGAAGAAGGCAAAAGGGGCACAGGACATGGAGGTTGTGGTCATTACCAACCTTCTATCAGGCGGCAAGGATTAGATCTGACAGCAGAATGGAAACATGCTAATGAAGACACACAAGATAAAAAGATAATAATAACCGCAGAACGGGTTTATGAAATATTAAAACACATAACAGATGAAGATTCCTTTATTTTGGGTATGGACCCCAAATTTGCCAGACCCGATTGGATGATTGTCACAGTCCTTCCTGTACCACCTCTTGCAGTCAGACCCGCTGTAGTTATGTTTGGATCTGCTAAAAACCAGGATGATTTGACCCATAAGCTTGCTGATATTATAAAAGCTAATAATGAGTTGATGAGAAATGAACAATCAGGAGCTGCGGCTCATGTTCTAACTGACAATATCAGAATGTTACAGTTCCATGTTGCGACATTTGTTGATAATGACATGCCAGGAATGCCTAAGGCTATGCAAAAATCTGGTAAACCCTTGAAAGCCATAAAAGCAAGACTAAAAGGCAAAGAAGGTAGAATTCGTGGAAATCTTATGGGAAAACGTGTTGATTTCTCAGCTAGAACAGTAATTACACCTGATCCTAATTTGCGCATTGACCAAGTAGGCGTCCCAAGATCTATTGCACAAAATTTGACATTCCCCGAGCTTGTAACGCCCTTCAACATTGATCGGATGCAAGAACTCGTGCGAAGAGGAAATGCACAGTACCCAGGTGCAAAATACATTGTTCGGGATAATGGTGAAAGAATAGATTTAAGATTCCACCCCAAACCATCAGATTTGCATCTACAATATGGCTACAAAGTTGAGCGTCACTTGAGAGATGATGATTTGGTTATCTTCAACCGACAACCAACACTACATAAGATGAGTATGATGGGTCATAGGGTCAAAGTATTGCCATGGTCAACATTTCGTATGAACTTGAGTTGTACTTCGCCGTACAATGCTGATTTCGACGGCGATGAAATGAATTTACATGTACCCCAGTCTATGGAAACACGAGCGGAAGTAGAAAACATACACATAACGCCTCGTCAAATTATAACTCCACAAGCTAATAAACCAGTCATGGGTATTGTGCAAGATACACTGACTGCTGTCAGAAAAATGACAAAACGAGACGTATTTTTAACGAAAGAGCAAGTAATGAACTTGCTAATGTTTTTACCAACATGGGATGGAAAAATTCCACAACCTTGCATCCTGAAGCCACAACCGCTTTGGACAGGAAAACAAATATTTACTCTGATCATTCCTGGAAATGTCAATATGGTGCGTACTCATTCCACACATCCTGATGATGAGGACGATGGTGTTAATAGATGGATATCACCTGGAGACACTAAAGTAATTGTGGAACACGGGGAACTTCTTATGGGTATTCTGTGTAAGAAATCTCTTGGTGCATCTGCTGGTTCTTTACTGCATATATGTATGTTGGAGTTAGGACATGAAATAGCTGGTCGTTTTTACGGTAACATTCAAACTGTCATCAATAATTGGCTACTATTGGAAGGTCACTCCATTGGTATTGGGGATACAATTGCTGATCCTCAAACATATCAAGAAATCCAAAGGGCTATTGTGAAGGCTAAAGATGATGTCATAGAAGTTATACAGAAAGCTCACAATATGGAGCTTGAGCCAACTCCTGGTAATACTCTGAGGCAAACTTTCGAAAATCAGGTCAATCGTATTCTTAACGACGCTCGTGACAAAACTGGTGGTTCAGCCAAAAAGTCTCTAACAGAGTACAATAACCTTAAAGCTATGGTAGTCGCTGGTTCCAAAGGATCAAACATCAATATTTCACAAGTCATTGCTTGCGTGGGTCAGCAAAACGTCGAAGGAAAGCGTATTCCGTTTGGCTTCCGTAAGAGAACATTGCCGCATTTTATCAAAGACGATTATGGTCCGGAATCAAGAGGTTTCGTAGAGAACTCTTACCTGGCCGGTTTAACACCATCTGAGTTTTATTTCCACGCTATGGGAGGTCGTGAAGGTCTTATCGATACAGCTGTCAAAACTGCCGAGACTGGGTATATTCAGCGGCGTTTGATAAAGGCTATGGAATCTGTTATGGTGCATTATGATGGCACAGTCCGAAATTCGGTTGGACAACTGATTCAACTAAGATATGGTGAGGATGGTTTAGCTGGAGAAACAGTAGAGTTCCAAAACATGCCCACTGTAAAGTTATCCAACAAGGCATTTGAAAAGAAATTTAAGTTCGACCCAACCAATGAAAGGTATTTGAAGAGAATTTTCCATGAAGATATTATAAAAGAACTAACGGAGTCGGGTTACGTGATTGCCGACTTGGAAAGCGAATGGGAACAGCTTTGCAAAGATCGTGAAATATTGCGACAAATTTTCCCTAGCGGTGAATCTAAAGTTGTATTGCCGTGCAACTTCAGAAGAATGATTTGGAATGTTCAAAAGATTTTCCACATCAATAAGAGAATGTCAACAGATTTAAGTCCGATAAAAGTGATACAAGGCGTGAAAGATCTTTTGAAGAAATGTGTCATTGTCGCTGGTGAAGATCGTTTGTCTAAACAAGCGAATGAAAATGCAACCTTACTCTTCCAATGTTTAGTAAGATCTACTTTTTGCACGAAGTATGTATCTGAAGATTACAGACTATCAAGTGAAGCTTTCGAATGGTTGATTGGAGAAATTGAAACAAGATTCCAACAAGCACAAGTCAACCCAGGTGAAATGGTTGGGGCCCTGGCAGCCCAGTCTCTTGGAGAGCCGGCTACTCAGATGACATTGAATACCTTCCACTTTGCCGGTGTGTCATCTAAAAACGTAACTCTTGGTGTACCGCGTCTAAAAGAAATCATTAACATATCAAAGAAACCAAAAGCACCATCTCTAACAGTATTCCTTACTGGAGGCGCGGCCAGAGATGCAGAGAAAGCTAAGAATGTTCTGTGTCGATTGGAACACACGACATTGCGTAAAGTCACAGCCAATACCGCTATCTACTACGATCCAGACCCTCAGAACACAGTTATTGCTGAAGATCAAGAGTTTGTTAATGTTTATTATGAAATGCCTGATTTTGATCCAACAAAGATTTCACCTTGGCTATTGCGTATTGAACTGGACCGCAAGAGAATGACAGACAAGAAGCTGACGATGGAACAGATCGCTGAGAAGATTAACGCTGGGTTCGGGGATGATCTCAATTGTATTTTCAATGACGATAATGCTGAAAAATTGGTTTTGCGAATAAGAATTATGAACAACGAGGAGAGCAAATTCCAAGACAACGACGAAGAAACGGTCGATAAAATGGAAGACGATATGTTCCTTAGATGTATTGAAGCGAACATGTTATCGGACATGACTTTACAGGGTATTGAGGCTATAGCAAAAGTGTACATGCACTTGCCGCAGACTGAAGCGAAGAAACGCATTATTATAACAGATCAAGGCGAATTTAAAGCGATCGCAGAGTGGCTTTTGGAAACAGATGGTACTTCACTTATGAAAGTACTGTCAGAACGAGACGTAGATCCAGTGCGGACATTCAGTAACGATATTTGTGAGATATTCCAAGTGCTAGGTATAGAGGCTGTGCGGAAGTCAGTCGAGAAGGAAATGAATGCTGTGTTGCAATTCTATGGTCTTTATGTAAACTACAGACATCTCGCTTTGCTTTGTGACGTGATGACTGCCAAAGGTCATCTTATGGCTATAACACGTCACGGTATTAACAGACAAGATACCGGAGCACTCATGAGGTGTTCTTTTGAAGAGACTGTAGATGTTTTACTTGATGCGGCTAGTCACGCTGAAGTTGATCCTATGAGAGGCGTTTCTGAAAATATTATCATGGGGCAATTGCCGCGAATGGGAACCGGTTGTTTCGATTTATTACTGGATGCTGAGAAATGTAAACATGGAATGGAAATGGGCGGTCTAGGTGTCGGAATGGGAGTCGCAGGTGGGATGTATTTCGGTGTCGGCACACCTTCCATGACACCACTGATGACGCCCTGGTCAAACCAAAACACTCCCGGATATGGCAGCAGTGTTTGGTCGCCTGGTCAAGTTGGAAGCAGCATGACACCAGGAGGGCCATCATTCTCGCCGTCGGGAGCATCAGACGCGTCAGGGTTGTCACCTGCTTATAGCAGTTCATGGTCTCCACAACCAGGGTCACCAGGTTCCCCGGGCGCTCCGTTATCACCTTACGCCTCGCCAGCGGGAGCGTCTCCCTCGTATTCTCCCACCAGTCCAGTATATGCTGCTCCCTCACCCAGTGTCACGCCGTCCTCGCCAGTCTATTCCCCCACCGGACCTTCTTACTCTCTAACATCACACAATTACTCACCAACGTCACCGATCTATTCGCCGAACTCGCCGAGATACTCACCAAGGTATTCGCCAACGTCCCCCGGCTATTCCCCCCCGTCACCAAGATACTCCCCAACATCTCCAAGCTATTCGCCAACCAGCCCGGCGTATTCACCAAACTCTCCGAGCTATTCGGTGAAATCACAAGACTATTCACCGACTAGTCCCAACTATTCTCCCGCAAGTACATCTTATTCACCGAGCGGACCCGTGTATTCTGTCAACTCGCAAGGATATTCGCCATCGTCTCTAAATTACTCCCCCAGTAATCTTGTTTATAGTCCGACCTCACAAAACTACTCTCCCTCATCACCGAATTACACCCCTCCGGCACCACCGTACTCGCCGACGAGCCATTCATATTCATTGCCCTATTCACCGGCATCTCCAAGTATTTCTCCGTCATCGCCGAAATATTCACCATCACCGAATTATTCGCCGACATCACCATCGGTTTCCGGAGGAAGTCCCACGTATTCGCCGACAAGCCATCAATACGGGCCGAAGAGTCCTCAATATTCCCCGTCGAGCACAGCGTACTCGCCTTCGTCACCTCAACATCCGGGCAGTGCGAGATATTCACCATCATCGCGGAACTACTTGTCATCTTCACCACAATATTCCCCATCATCTCCCAGATATTCACCGTCTTCTAATAAATATTCTCCGACTAATATAACCTACACTCCGACATCTTCTAATTATTCACCATCTTCACCGGCGTATTCATCTTCGTCCGGTCCATCCAAATATTCGCCGACATCACCAAATTATTCGCCGACCTCCCCGTCTCATGACGATCTTGACGATTAG

Protein sequence:

>DPOGS203690-PA
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGTGHGGCGHYQPSIRRQGLDLTAEWKHANEDTQDKKIIITAERVYEILKHITDEDSFILGMDPKFARPDWMIVTVLPVPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRMLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHPDDEDDGVNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTVKLSNKAFEKKFKFDPTNERYLKRIFHEDIIKELTESGYVIADLESEWEQLCKDREILRQIFPSGESKVVLPCNFRRMIWNVQKIFHINKRMSTDLSPIKVIQGVKDLLKKCVIVAGEDRLSKQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITDQGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVAGGMYFGVGTPSMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSSSWSPQPGSPGSPGAPLSPYASPAGASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSYSLTSHNYSPTSPIYSPNSPRYSPRYSPTSPGYSPPSPRYSPTSPSYSPTSPAYSPNSPSYSVKSQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPSSLNYSPSNLVYSPTSQNYSPSSPNYTPPAPPYSPTSHSYSLPYSPASPSISPSSPKYSPSPNYSPTSPSVSGGSPTYSPTSHQYGPKSPQYSPSSTAYSPSSPQHPGSARYSPSSRNYLSSSPQYSPSSPRYSPSSNKYSPTNITYTPTSSNYSPSSPAYSSSSGPSKYSPTSPNYSPTSPSHDDLDD-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: