| DPOGS203722 | ||
|---|---|---|
| Transcript | DPOGS203722-TA | 1122 bp |
| Protein | DPOGS203722-PA | 373 aa |
| Genomic position | DPSCF300010 - 965888-983512 | |
| RNAseq coverage | 1x (Rank: top 93%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008536 | 5e-65 | 95.65% | |
| Bombyx | BGIBMGA003529-TA | 6e-109 | 59.83% | |
| Drosophila | nAcRalpha-96Aa-PA | 7e-52 | 35.21% | |
| EBI UniRef50 | UniRef50_F4W9W4 | 2e-92 | 48.37% | Neuronal acetylcholine receptor subunit alpha-7 n=1 Tax=Acromyrmex echinatior RepID=F4W9W4_ACREC |
| NCBI RefSeq | NP_001166811.1 | 1e-146 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A [Bombyx mori] |
| NCBI nr blastp | gi|290560638 | 3e-145 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A precursor [Bombyx mori] |
| NCBI nr blastx | gi|290560638 | 2e-142 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A precursor [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016021 | 2e-85 | integral to membrane | |
| GO:0006811 | 2e-85 | ion transport | ||
| GO:0016020 | 1.7e-56 | membrane | ||
| GO:0006810 | 1.7e-56 | transport | ||
| GO:0005230 | 1.7e-56 | extracellular ligand-gated ion channel activity | ||
| GO:0004889 | 1.3e-10 | nicotinic acetylcholine-activated cation-selective channel activity | ||
| GO:0005216 | 1.3e-10 | ion channel activity | ||
| GO:0045211 | 1.3e-10 | postsynaptic membrane | ||
| KEGG pathway | ptr:464500 | 2e-53 | ||
| K04814 (CHRNB3) | maps-> | Neuroactive ligand-receptor interaction | ||
| InterPro domain | [2-372] IPR006201 | 2e-85 | Neurotransmitter-gated ion-channel | |
| [14-174] IPR006202 | 1.7e-56 | Neurotransmitter-gated ion-channel ligand-binding | ||
| [177-366] IPR006029 | 4.2e-28 | Neurotransmitter-gated ion-channel transmembrane domain | ||
| [47-63] IPR002394 | 1.3e-10 | Nicotinic acetylcholine receptor | ||
| Orthology group | MCL17699 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS203722-TA
ATGGAGTATAAAAAAGAAGTACGTACATGTGATGAAGAATACCAACTAATTCGACATCTAATGGGAAAGTATGACGCCTCAGTGCGCCCTGTGGAGAACTCCTCCCACCCCCTCCTCGTGACCTTCGGCGTCTCACTGCATCACATCATCGACGTGGAAGAAAAAGATCAACTGTTGACAACCAACTGTTGGATAACCCAAATATGGACAGATCACCATTTACGGTGGAATGTTAGCGATTTTGATGGAATCAACGTTATAAGAATACCATACGAAAGAGTCTGGAAGCCGGATATAATCTTATATAATAACGCGGATCCCAACTACCGATCAGCTGTTATCAACACTAATGTAATAGTGAAGAACACTGGTGAGGTGACGTGGTTGAGCCACGGTATATATGTGTCCGTATGCGACATCAACGTGGAACAATTCCCCTTTGATATCCAGCTCTGCACCATGAAGTGGGCTTCATGGACCTACGATGGCTTTCAGATCTTACATGCAATAAGAAACGATAGTTACCATGTCCGTATTACGCTCTTAGTATTTTACGTGCCATCGGAGTCTGGGGAAAAAGTCACACTGGGAATTAGCGCGCTTCTTTCGATGACAGTATTTCTTATGACAATAAGAGATACGCTGCCTCCAACCGAAAAAACACCATTAATAAGTTTATACTATGGAGTAAGTACGTGTCTGGTGACATTCTCAGCCTCTCTGTCGGTCTTCACTCTTAATATATCTTACAGGCAAACAAGCGATGTTGTTCGTAGAGGAGTGAGAGGGCAGCCGGTGCCGGCGATCGTACGTGAGCTCGTATTGCAGAGGCTGGCTCGCTTACTTTGCATAAACTTCGATACTGACGTTAAGAATGACAGTACAGTGACTACAGGGGTGCAAGTGAATCCGCGTACAGGGTCACGGCTGAAGGCCGAGATATTAGATGGACCAGCGCCTGCCTCTCCACGCTTTACCAGAAACCACAACCACCTCATTGTAGCAGACCGCGCTCTTCTTGCAGTATTTGTGCTTGTTACAACAATATCTACAGCTGCTATTCTCCTACCTCAACTAAACAATCTACACGTAGGTAATACGCCTTTAAAACCACCATCCTAG
>DPOGS203722-PA
MEYKKEVRTCDEEYQLIRHLMGKYDASVRPVENSSHPLLVTFGVSLHHIIDVEEKDQLLTTNCWITQIWTDHHLRWNVSDFDGINVIRIPYERVWKPDIILYNNADPNYRSAVINTNVIVKNTGEVTWLSHGIYVSVCDINVEQFPFDIQLCTMKWASWTYDGFQILHAIRNDSYHVRITLLVFYVPSESGEKVTLGISALLSMTVFLMTIRDTLPPTEKTPLISLYYGVSTCLVTFSASLSVFTLNISYRQTSDVVRRGVRGQPVPAIVRELVLQRLARLLCINFDTDVKNDSTVTTGVQVNPRTGSRLKAEILDGPAPASPRFTRNHNHLIVADRALLAVFVLVTTISTAAILLPQLNNLHVGNTPLKPPS-