| DPOGS204030 | ||
|---|---|---|
| Transcript | DPOGS204030-TA | 561 bp |
| Protein | DPOGS204030-PA | 186 aa |
| Genomic position | DPSCF300138 - 23164-25170 | |
| RNAseq coverage | 1476x (Rank: top 9%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008163 | 6e-83 | 76.34% | |
| Bombyx | BGIBMGA004884-TA | 4e-55 | 75.59% | |
| Drosophila | CG10219-PA | 7e-31 | 42.77% | |
| EBI UniRef50 | UniRef50_Q9VCI5 | 7e-29 | 42.77% | Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial n=10 Tax=Drosophila RepID=DHSD_DROME |
| NCBI RefSeq | XP_001994249.1 | 8e-31 | 43.83% | GH11519 [Drosophila grimshawi] |
| NCBI nr blastp | gi|195054673 | 1e-29 | 43.83% | GH11519 [Drosophila grimshawi] |
| NCBI nr blastx | gi|195054673 | 2e-29 | 43.83% | GH11519 [Drosophila grimshawi] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006099 | 3.5e-32 | tricarboxylic acid cycle | |
| GO:0005740 | 3.5e-32 | mitochondrial envelope | ||
| GO:0020037 | 3.5e-32 | heme binding | ||
| GO:0005506 | 3.5e-32 | iron ion binding | ||
| GO:0016021 | 3.5e-32 | integral to membrane | ||
| KEGG pathway | dgr:Dgri_GH11519 | 2e-30 | ||
| K00237 (SDHD, SDH4) | maps-> | Huntington's disease | ||
| Citrate cycle (TCA cycle) | ||||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [62-179] IPR007992 | 3.5e-32 | Cytochrome b, succinate dehydrogenase small subunit, CybS | |
| Orthology group | MCL11451 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS204030-TA
ATGGCCTTCTCGATGTTCCTTCGCACCCCTGCCTGTGCTGGCCGACTACTATCCCAACAAGTGATGAGGCTGGGCACACAAGCTTCGCTAAAACCTGTTCAGACACAAAGAACGCTCGTTGCTGTCAACACACTCAAGAATACTCTCTTGAAGTCTGAAACAACGCCTATATTGAATGCAGTCCGGTCATTCCGTACATCAGCTGTGAAGATGGCAGCCGCCAAAAGCGATGACCACTCAAAGCTGTGGGTGATAGAGAGGATAACATCGGCAATCCTTATCCCACTCGTCCCGTTAGCTCTGCTTGTGCCCAACAAGCTGTTTGATTCCCTGCTGGCCATTATTGTTGTAGCCCACAGTTTCTGGGGCTTAGAGGCGATCGCAGTGGACTATGTTAGAGCTTCTCTGTTCGGGCCTCTCATTCCTAAGCTAGCCATCGGCCTGGTTTATCTCATATCAATCGCGACCCTCGGAGGTCTTTTCTACATCATCACCCACGACATAGGTATCGCCAACTCCATCAGACAATTCTGGTCGGTCAAGTCTGGACAGAAAGCGTAA
>DPOGS204030-PA
MAFSMFLRTPACAGRLLSQQVMRLGTQASLKPVQTQRTLVAVNTLKNTLLKSETTPILNAVRSFRTSAVKMAAAKSDDHSKLWVIERITSAILIPLVPLALLVPNKLFDSLLAIIVVAHSFWGLEAIAVDYVRASLFGPLIPKLAIGLVYLISIATLGGLFYIITHDIGIANSIRQFWSVKSGQKA-