DPOGS204110 | ||
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Transcript | DPOGS204110-TA | 471 bp |
Protein | DPOGS204110-PA | 156 aa |
Genomic position | DPSCF300184 - 166918-172184 | |
RNAseq coverage | 568x (Rank: top 22%) |
Annotation | ||||
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Heliconius | HMEL008290 | 2e-88 | 100.00% |   |
Bombyx | BGIBMGA013598-TA | 5e-70 | 97.66% |   |
Drosophila | AP-1sigma-PC | 5e-76 | 85.16% |   |
EBI UniRef50 | UniRef50_E2BDI1 | 3e-73 | 94.37% | AP-1 complex subunit sigma-2 n=20 Tax=Eukaryota RepID=E2BDI1_HARSA |
NCBI RefSeq | NP_001040229.1 | 2e-86 | 99.36% | adaptin [Bombyx mori] |
NCBI nr blastp | gi|114052214 | 3e-85 | 99.36% | adaptin [Bombyx mori] |
NCBI nr blastx | gi|114052214 | 2e-84 | 99.36% | adaptin [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0008565 | 3.4e-133 | protein transporter activity | |
GO:0015031 | 3.4e-133 | protein transport | ||
GO:0006810 | 1.5e-46 | transport | ||
KEGG pathway | nvi:100113912 | 2e-83 |   | |
  | K12394 (AP1S1_2) | maps-> | Lysosome | |
InterPro domain | [1-155] IPR016635 | 3.4e-133 | Adaptor protein complex, sigma subunit | |
[1-139] IPR022775 | 6.2e-58 | AP complex, mu/sigma subunit | ||
[1-141] IPR011012 | 1.5e-46 | Longin-like | ||
Orthology group | MCL12911 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS204110-TA
ATGCAATTTATGTTGCTATTCAGCAGACAAGGCAAATTAAGACTTCAGAAATGGTATGTGGCACATCCAGACAAATTAAAAAAGAAAATAACAAGAGAGCTCATAACAACTGTCCTAGCAAGAAAACCGAAAATGTGCTCCTTCTTAGAATGGAAAGACGTCAAAGTGGTTTATAAAAGATATGCATCCCTGTACTTCTGCTGTGCCATGGAACAAGAGGATAACGAACTTCTAACATTGGAACTCATACACAGATATGTGGAACTGCTCGACAAATATTTTGGAAGTGTGTGCGAATTGGATATAATCTTCAACTTCGAGAAGGCTTACTTCATTCTGGACGAGTTGGTGCTGGGCGGGGAGTTGCAGGAGACAAGCAAGAAGAATGTGCTCAAAGCAATCGCCGCCCAGGACTTACTGCAGGAGGAGGAGACGCCGCAGGGTTTCTTCGAGGATCACGGCCTCGGTTAA
>DPOGS204110-PA
MQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG-