Monarch geneset OGS2.0

DPOGS204682
TranscriptDPOGS204682-TA798 bp
ProteinDPOGS204682-PA265 aa
Genomic positionDPSCF300170 - 3642-6019
RNAseq coverage42x (Rank: top 72%)
Annotation
HeliconiusHMEL0144531e-10570.66% 
BombyxBGIBMGA005107-TA3e-1429.43% 
Drosophilaspn-D-PA1e-2733.48% 
EBI UniRef50UniRef50_UPI0000586FDE3e-4338.40%UPI0000586FDE related cluster n=1 Tax=unknown RepID=UPI0000586FDE
NCBI RefSeqXP_001193914.15e-4438.40%PREDICTED: similar to RAD51L2/RAD51C protein [Strongylocentrotus purpuratus]
NCBI nr blastpgi|3485403873e-4340.40%PREDICTED: DNA repair protein RAD51 homolog 3-like [Oreochromis niloticus]
NCBI nr blastxgi|3485403872e-4240.08%PREDICTED: DNA repair protein RAD51 homolog 3-like [Oreochromis niloticus]
Group
KEGG pathwaydre:4500811e-43 
 K10870 (RAD51L2, RAD51C)maps-> Homologous recombination
InterPro domain[8-264] IPR0136322e-27DNA recombination and repair protein Rad51, C-terminal
Orthology groupMCL17489 Patchy
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS204682-TA
ATGACTACTAACTTTAAAATTTATAATGCTGCAGATCTTTGGCAGATCGAAACCAGCTCACCCGCTATACCTACATTTAGTCAGAAACTGGATAAAACTCTTGGAGACGATGGAATACCGTTAGGAAGTTTGACTGAAGTTTTAGGCTTACCCGGCACTGGGAAAACTCAACTGTGTTTACAGTTATGTGCATCTGTCCAAGTCCCTAAAGTATTGGGTGGCCTACAATCTGAATCACTGTACATAGACACAAATACAAACTTTACATTATGTAGATTTAAAGAAATATTATTTGCTAGCTTAGCTAAATGCCAAAGATTATTGGATACATCAATAGCTATAAGTGAGGAAGATGCATTGAAAAAATTTCATTATATTAAGACAATTGGCCTGGAGAAATTTTGCTCGTTTTTAAACCAATTACCAAATTATTTAACTGAATATCCTAATGTGAAGCTTATAGTAATTGATTCTATAGCCTTTCCATTTAAAGAAGGTTCAATATCTCTGAAACAAAGAACCGGATTATTGTTCCGTTTGATGGCTGACTTACACAAGTTAGCTGTAGATAAACAAATAGCTGTGGTGTTGACAAATGAAATGAGTAATAGATTGGGTCTATCGTCCGGAGCGCTTGTTGGCGCTTTGGGTGATGCTTGGGCTCATCGCTGTAATATACGCCTTCTCCTGTGTGCTGATAAGAATGAGTCCTGTGCTGTTCTGGCAAAGAGCAATACTGCACCAGAGGCAGCTGTTAAATTTAAGATAACAAGGGAAGGAATACGGGACGCTGATTGA

Protein sequence:

>DPOGS204682-PA
MTTNFKIYNAADLWQIETSSPAIPTFSQKLDKTLGDDGIPLGSLTEVLGLPGTGKTQLCLQLCASVQVPKVLGGLQSESLYIDTNTNFTLCRFKEILFASLAKCQRLLDTSIAISEEDALKKFHYIKTIGLEKFCSFLNQLPNYLTEYPNVKLIVIDSIAFPFKEGSISLKQRTGLLFRLMADLHKLAVDKQIAVVLTNEMSNRLGLSSGALVGALGDAWAHRCNIRLLLCADKNESCAVLAKSNTAPEAAVKFKITREGIRDAD-