Monarch geneset OGS2.0

DPOGS204687
TranscriptDPOGS204687-TA3447 bp
ProteinDPOGS204687-PA1148 aa
Genomic positionDPSCF300170 + 73714-84007
RNAseq coverage20x (Rank: top 79%)
Annotation
HeliconiusHMEL0175950.092.16% 
BombyxBGIBMGA010135-TA0.082.38% 
DrosophilaNmdar1-PA0.067.18% 
EBI UniRef50UniRef50_Q4QYY70.074.95%NMDA-type glutamate receptor subunit 1, variant 1 (NR1.1) n=13 Tax=Coelomata RepID=Q4QYY7_APICA
NCBI RefSeqXP_969654.10.077.99%PREDICTED: similar to NMDA-type glutamate receptor 1 [Tribolium castaneum]
NCBI nr blastpgi|910907760.077.99%PREDICTED: similar to NMDA-type glutamate receptor 1 [Tribolium castaneum]
NCBI nr blastxgi|910907760.077.99%PREDICTED: similar to NMDA-type glutamate receptor 1 [Tribolium castaneum]
Group
Gene OntologyGO:00160202.9e-80membrane
GO:00049702.9e-80ionotropic glutamate receptor activity
GO:00052342.9e-80extracellular-glutamate-gated ion channel activity
GO:00048721.9e-57receptor activity
GO:00068111.9e-57ion transport
GO:00052161.9e-57ion channel activity
GO:00068108e-20transport
GO:00302888e-20outer membrane-bounded periplasmic space
GO:00052158e-20transporter activity
KEGG pathwaytca:6581520.0 
 K05208 (GRIN1)maps-> Huntington's disease
    Amyotrophic lateral sclerosis (ALS)
    Alzheimer's disease
    Neuroactive ligand-receptor interaction
    Calcium signaling pathway
    Long-term potentiation
InterPro domain[633-1018] IPR0013202.9e-80Ionotropic glutamate receptor
[691-719] IPR0015081.9e-57NMDA receptor
[305-584] IPR0018283.4e-36Extracellular ligand-binding receptor
[719-1016] IPR0016388e-20Extracellular solute-binding protein, family 3
[665-729] IPR0195949.7e-15Glutamate receptor, L-glutamate/glycine-binding
[1061-1089] IPR0188821.2e-13Calmodulin-binding domain C0, NMDA receptor, NR1 subunit
Orthology groupMCL15139 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS204687-TA
ATGTCTACAAAAGTAATGATTATTGCTATAATTCTGGCGGCCATTGCAGCCTGCTGGGCACAGAAAAACACTGACAAGAGGAGTGCCACTGGCTGGGATATTAGTAGTTTGATACCCGGCTTAGTTCAAGTGTCTGCTGCACCAGTTAGTGCCAGCTGGCCATCGGATACTAGCTCGGATGTAGCTGGTGCTATAGCAGCGGCAAAAGCAGCAGCGTCAGCAGTGATGGCCGCACAGCGACAAGTTGCTGCCGCCAAGCACGCTGCTCTTGAACAGCAGAGCATGGCCAGTGCAAAAGAAGCTGAAGCTGCACATGCTGCTCATAAAAGCGAGGAGACAGCTCGCGCCGCTCGTGCCCAAGCTCTCGAAGCTGCACAAAGCGCTGTGCATGCGCAGGCGCAGCTTGCATCGGCTAAGGCAAGGGCAGCGGCTGCTCAAAAGATCGCTGCTGCTAGAGAGGCGGCAGCCGCTCGCGCTATACAACAAGCAGCTCAGAACCAGGCCGCGAAACTGCAAAATGCTGATTTAGAAGCCCTGAAGCTATCAGTGATCCAGAGCTCAGGAGCTGCAGGTGCTGCAGGTGCGGCACAACATGCTGCAACAGCGGCCGCAGCTGCTCTCAAACCAGCCAGCTGGACTCCTTCCTGGAAGACCTGGACATCAGCTGGAAGTATGTTCTGGATATTGTTAGTGTGCAGCCTCTGTAGCCTCGTCAACGCAGATGTAGACAGACGAAGATATTCCAATCCTACATATTATAATGTGGGCGGAGTACTCTCCAGTAATGAGTCTATAGCTTTCTTTAAGGATACTATATCAAACTTAAACTTCAAAGACAAATATGTTCCCCGCGGAGTTACCTATCATGACTATTCTATACTTATGGATCCAAACCCTATAAAAACAGCCCTCAATGTTTGCAAAGATCTCATTGCACATCGAGTTTACGCGGTGGTCGTGTCTCATCCGTTGACAGGAGATCTTTCTCCCGCAGCTGTATCGTACACCAGCGGCTTTTACCACATCCCAGTTATTGGTATATCGTCAAGAGATTCTGCTTTCTCTGATAAGAATATACACGTGTCATTTTTGCGTACAGTCCCACCGTACTCTCATCAGGCGGATGTGTGGGTGGATGTATTAAAACACTTTAATTACATGAAGGTTATCGTCATTCACAGTTCTGATACCGACGGTCGTGCTATACTGGGAAGATTCCAAACAACATCTCAAAGTATTGATGAGGATGTGGATCGTAAAGTTTTTGTAGAACAGGTTATAGAGTTCGAGCCAGGCCTAGACTCGTTTAGTGACAAACTTATTGAAGTTAAAAGTGCACAAGCCCGAGTTTTCCTAATGTATGCCAGTAAGACAGATGCGGAGATAATATTCCGTGATGCGACATACCTTAATATGACGACGACGGGATACGTGTGGATAGTGACAGAGCAGGCCCTGGATGCAGCCAACGCTCCCGAGGGATTGCTGGGCTTGAGGCTTGTGAATGCCACAAATGAACATGCTCACATACAGGATTCGATTTACGTATTAGCATCAGCGATACGGGACATGAATACTTCAGAGGAAATCAACGCTCCTCCATCAGATTGTGATAACTCCGGGTCCATCTGGACCACTGGGAGACTGTTGTTCGATTACATCCGCAAACAGCGCTTGGAGAACGGTGCCACTGGCCATGTGGCGTTTGATGATCACGGAGACAGGGTCCACGCGGAGTACGACATGGTGAATGTAAGAGCTCAGGGCGAACACGTTGCTGTTGGGAAATACTTCTATTCGAAGGATACACAAAAAATGCGGTTGGAGCTTAAAGAACATGAAATAATTTGGATGGGACGGAGTTCCACAAAACCGGAGGGATTTATGATACCGACCCATTTAAAGGTTCTAACAATTGAGGAAAAACCTTTTGTTTACGCTCGACGAGTAGACGATGAAACGGAATGTTTTACCGAAGAAATATTTTGTCCTCACTATAATACAAATCAACTTTATTGCTGTAAGGGCTTCTGTATGGACCTTCTCCGATATTTATCTAAAGCTATTAATTTTACTTACTCCTTGGCTCTTTCACCGGACGGACAGTTCGGAAACTATATCATACGTAACTTTTCGCAACCGGGAGCTAAGAAGGAATGGACTGGGCTTATCGGAGAATTGGTTTATGAAAGGGCGGACATGATAGTAGCTCCATTAACTATAAACCCTGAGCGAGCTGAATTTATAGAGTTCAGCAAACCATTCAAATATCAGGGCATAACAATTTTGGAAAAAAAGCCTTCAAGGTCATCAACGTTGGTATCGTTTTTGCAACCATTTTCAAACACATTATGGATACTGGTTATGGTATCAGTACACGTGGTCGCACTAGTACTGTATCTGTTAGATAGATTCTCACCCTTCGGAAGATTTAAACTAGCTCATATAGACGGCACCGAGGAAGATGCTCTGAACCTGTCAAGCGCCATATGGTTTGCTTGGGGCGTGTTATTGAACAGTGGAATTGGGGAAGGAACACCACGTAGTTTCTCAGCCCGAGTCCTTGGTATGGTATGGGCCGGGTTTGCTATGATAATTGTCGCATCATACACAGCCAACTTAGCCGCTTTTCTTGTGTTAGAAAGACCTAAGACTAAATTAACTGGAATTAATGACGCGAGGTTGCGTAATACCATGGAGAATTTAACTTGCGCTACGGTCAAAGGATCAGCCGTGGACATGTACTTCCGGAGACAGGTTGAATTATCGAACATGTATAGGACCATGGAGGCAAATAACTACGACAACGCTGAACAAGCCATACAAGATGTAAAAAACGGGAAGCTTATGGCATTCATCTGGGATTCGTCGAGATTGGAATTCGAAGCTGCCCAAGATTGTGAGCTGGTGACCGCCGGCGAGCTCTTTGGCAGATCTGGTTATGGAGTGGGACTACAGAAGGGTTCACCATGGGCCGATCTTGTCACATTAGCCATTTTGGATTTTCACGAAAGTGGCATCATGGAGTCTCTTGATAATCAATGGATACTTCGAAATAACATGCTGAATTGTGAGGAGAACGAAAAGACGCCGAACACACTGGGTTTAAAAAACATGGCCGGAGTTTTCATACTGGTGTTGGCGGGCATCGTCGGCGGTATAGTTCTCATCGTTATAGAAGTTGTGTACAAACGGCACCAGATCAAAAAACAGAAGAGGATGGAGATAGCTCGCCACGCCGCGGACAGATGGCGCGGCGCCGTTGAGAAACGTAAGACGTTGAGAGCTGCCATATTGCCGTCGCAGCGACGCGCGAAATCGAACGGTGTGAAAGAGACGGGGAGTATCAGTCTCGCTGTTGATAGAGGAGTGCGGCGGCGCGACGAACCGAGGATACCGCGTTATATGCCAGCCTATACACCTGATGTATCTCATCTTGTGGTTTAA

Protein sequence:

>DPOGS204687-PA
MSTKVMIIAIILAAIAACWAQKNTDKRSATGWDISSLIPGLVQVSAAPVSASWPSDTSSDVAGAIAAAKAAASAVMAAQRQVAAAKHAALEQQSMASAKEAEAAHAAHKSEETARAARAQALEAAQSAVHAQAQLASAKARAAAAQKIAAAREAAAARAIQQAAQNQAAKLQNADLEALKLSVIQSSGAAGAAGAAQHAATAAAAALKPASWTPSWKTWTSAGSMFWILLVCSLCSLVNADVDRRRYSNPTYYNVGGVLSSNESIAFFKDTISNLNFKDKYVPRGVTYHDYSILMDPNPIKTALNVCKDLIAHRVYAVVVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQADVWVDVLKHFNYMKVIVIHSSDTDGRAILGRFQTTSQSIDEDVDRKVFVEQVIEFEPGLDSFSDKLIEVKSAQARVFLMYASKTDAEIIFRDATYLNMTTTGYVWIVTEQALDAANAPEGLLGLRLVNATNEHAHIQDSIYVLASAIRDMNTSEEINAPPSDCDNSGSIWTTGRLLFDYIRKQRLENGATGHVAFDDHGDRVHAEYDMVNVRAQGEHVAVGKYFYSKDTQKMRLELKEHEIIWMGRSSTKPEGFMIPTHLKVLTIEEKPFVYARRVDDETECFTEEIFCPHYNTNQLYCCKGFCMDLLRYLSKAINFTYSLALSPDGQFGNYIIRNFSQPGAKKEWTGLIGELVYERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLAHIDGTEEDALNLSSAIWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDNAEQAIQDVKNGKLMAFIWDSSRLEFEAAQDCELVTAGELFGRSGYGVGLQKGSPWADLVTLAILDFHESGIMESLDNQWILRNNMLNCEENEKTPNTLGLKNMAGVFILVLAGIVGGIVLIVIEVVYKRHQIKKQKRMEIARHAADRWRGAVEKRKTLRAAILPSQRRAKSNGVKETGSISLAVDRGVRRRDEPRIPRYMPAYTPDVSHLVV-