| DPOGS204723 | ||
|---|---|---|
| Transcript | DPOGS204723-TA | 522 bp |
| Protein | DPOGS204723-PA | 173 aa |
| Genomic position | DPSCF300257 + 140773-141984 | |
| RNAseq coverage | 1108x (Rank: top 11%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL011711 | 1e-59 | 81.48% | |
| Bombyx | BGIBMGA008248-TA | 2e-55 | 92.73% | |
| Drosophila | tko-PB | 9e-49 | 81.08% | |
| EBI UniRef50 | UniRef50_P10735 | 9e-47 | 81.08% | 40S ribosomal protein S12, mitochondrial n=22 Tax=Metazoa RepID=RT12_DROME |
| NCBI RefSeq | NP_001040492.1 | 5e-54 | 92.73% | mitochondrial ribosomal protein S12 [Bombyx mori] |
| NCBI nr blastp | gi|114052733 | 7e-53 | 92.73% | mitochondrial ribosomal protein S12 [Bombyx mori] |
| NCBI nr blastx | gi|114052733 | 3e-54 | 92.73% | mitochondrial ribosomal protein S12 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005840 | 1.2e-55 | ribosome | |
| GO:0006412 | 1.2e-55 | translation | ||
| GO:0005622 | 1.2e-55 | intracellular | ||
| GO:0003735 | 1.2e-55 | structural constituent of ribosome | ||
| GO:0015935 | 2.4e-35 | small ribosomal subunit | ||
| KEGG pathway | afo:Afer_0393 | 4e-24 | ||
| K02950 (RP-S12, rpsL) | maps-> | Ribosome | ||
| InterPro domain | [61-170] IPR006032 | 1.2e-55 | Ribosomal protein S12/S23 | |
| [63-171] IPR012340 | 3.6e-41 | Nucleic acid-binding, OB-fold | ||
| [63-172] IPR016027 | 1e-36 | Nucleic acid-binding, OB-fold-like | ||
| [63-171] IPR005679 | 2.4e-35 | Ribosomal protein S12, bacteria | ||
| Orthology group | MCL13795 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS204723-TA
ATGAGGAACGGATTATCCTCCGCCGCGTGTCTTTTGACACCTGCGGCTTTGAAACTATTGTCATGTAACGGTAGAGTGTTTGGAGTTCCTAGTGTGGCAGCATCAGTCATTCCTTCGCCACTTTATAATTTCTCTCAAACACTGTCCCGTTTCTCTCCTCGCCCGGAGGGTCTGATCTCTCGGGCGATGGCTTCTCTCGCTCAGATGCACAAGACAGGTCCTCACATCAAGAAGAGAAAGTCCAGGAACCCGCTGAACGGAAAACCATTTGCTAAGGGTGTGATATTAAAGACATTGATAAAGAAGCCAAAGAAGCCGAACTCGGCCAATCGTAAGTGTGTGTTAGTACGTTTGTCTAACGGTAAGGAGATGGTCGCCTACATCCCCGGGATAGGACACAACCTTCAGGAACATAACATCGTACTCGTCAGAGTTGGCAGAGTAAAGGATTGTCCCGGCGTGAAGTTGAAGTGTGTCCGAGGCAAGTTCGACTTACCTCATGTCATCAAACAGAAAGTATAA
>DPOGS204723-PA
MRNGLSSAACLLTPAALKLLSCNGRVFGVPSVAASVIPSPLYNFSQTLSRFSPRPEGLISRAMASLAQMHKTGPHIKKRKSRNPLNGKPFAKGVILKTLIKKPKKPNSANRKCVLVRLSNGKEMVAYIPGIGHNLQEHNIVLVRVGRVKDCPGVKLKCVRGKFDLPHVIKQKV-