DPOGS204801 | ||
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Transcript | DPOGS204801-TA | 645 bp |
Protein | DPOGS204801-PA | 214 aa |
Genomic position | DPSCF300460 + 78561-80481 | |
RNAseq coverage | 318x (Rank: top 36%) |
Annotation | ||||
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Heliconius | HMEL013181 | 2e-65 | 77.98% |   |
Bombyx | BGIBMGA010724-TA | 3e-46 | 85.38% |   |
Drosophila | vps24-PA | 1e-80 | 69.06% |   |
EBI UniRef50 | UniRef50_G5AQ11 | 2e-67 | 64.44% | Charged multivesicular body protein 3 n=26 Tax=Coelomata RepID=G5AQ11_HETGA |
NCBI RefSeq | XP_968988.1 | 3e-86 | 73.52% | PREDICTED: similar to neuroendocrine differentiation factor [Tribolium castaneum] |
NCBI nr blastp | gi|312374357 | 2e-85 | 74.09% | hypothetical protein AND_16013 [Anopheles darlingi] |
NCBI nr blastx | gi|91089815 | 2e-86 | 73.97% | PREDICTED: similar to neuroendocrine differentiation factor [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0015031 | 1.3e-40 | protein transport | |
KEGG pathway | tca:657434 | 8e-86 |   | |
  | K12193 (VPS24, CHMP3) | maps-> | Endocytosis | |
InterPro domain | [18-187] IPR005024 | 1.3e-40 | Snf7 | |
Orthology group | MCL13980 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS204801-TA
ATGGGTTTATTTGGTAAATCACCGGAAAGAAATCCCAAGGAAATGGTAAATGAATGGTCTCACAAAATTCGAAAAGAAGGATATAATTTGGACAGACAAATAAGAGCCATTCAAAGGGAAGAGGAAAAAGTTAAAAGATCCCTTAAAGAAGCAGCAACCAAAAACGACAAACAAGTATGCACAATACTAGCAAAAGAAATCATAAGATCAAGAAAAACTATCAGCAAAATATACACAAGCAAAGCACATCTTAATTCTGTACAGATGCAAATGAAAAATCAACTCGCAACTTTAAGGGTGGCTGGGTCATTACAAAAATCCACGGAGGTGATGCAAGCAATGCAAGCGCTTGTCCGTTTACCCGAAATCGCAAATACCATGCAGGAATTGAGTAAGGAGATGATGAAGGCCGGCATTATTGAGGAGATGTTGGATGATACCATGTCCAACCTGGAGGATGAAGAGGAGATGGAAGAGGCAGCGCAGAGTGAGGTGGATAAGGTTTTGTGGGAGTTAACTCAAGGCAAGTTGGGGGAAGCCCCGGCGCCGCCGACAGCAGAGGCGCCCTCTACCAGCAAGGAGCCCGAGGAGGATGAAACGGAACTGGATGAAATGCAATCCAGACTCGAGGCTCTCAGATCATAG
>DPOGS204801-PA
MGLFGKSPERNPKEMVNEWSHKIRKEGYNLDRQIRAIQREEEKVKRSLKEAATKNDKQVCTILAKEIIRSRKTISKIYTSKAHLNSVQMQMKNQLATLRVAGSLQKSTEVMQAMQALVRLPEIANTMQELSKEMMKAGIIEEMLDDTMSNLEDEEEMEEAAQSEVDKVLWELTQGKLGEAPAPPTAEAPSTSKEPEEDETELDEMQSRLEALRS-