| DPOGS204856 | ||
|---|---|---|
| Transcript | DPOGS204856-TA | 642 bp |
| Protein | DPOGS204856-PA | 213 aa |
| Genomic position | DPSCF300227 + 203935-204918 | |
| RNAseq coverage | 80x (Rank: top 64%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013898 | 8e-110 | 87.79% | |
| Bombyx | BGIBMGA011753-TA | 1e-70 | 90.51% | |
| Drosophila | CG7339-PA | 7e-75 | 60.85% | |
| EBI UniRef50 | UniRef50_Q9VTL6 | 8e-73 | 60.85% | CG7339 n=11 Tax=Pancrustacea RepID=Q9VTL6_DROME |
| NCBI RefSeq | XP_394665.1 | 3e-77 | 70.00% | PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H isoform 1 [Apis mellifera] |
| NCBI nr blastp | gi|48096324 | 4e-76 | 70.00% | PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like isoform 1 [Apis mellifera] |
| NCBI nr blastx | gi|157130759 | 3e-78 | 64.09% | DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 1.5e-39 | DNA-directed RNA polymerase activity | |
| GO:0003677 | 1.5e-39 | DNA binding | ||
| GO:0006351 | 1.5e-39 | transcription, DNA-dependent | ||
| KEGG pathway | ame:411191 | 7e-77 | ||
| K03022 (RPC25) | maps-> | Cytosolic DNA-sensing pathway | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [1-163] IPR004519 | 1.5e-39 | DNA-directed RNA polymerase | |
| [79-196] IPR013238 | 2.5e-37 | RNA polymerase III, subunit Rpc25 | ||
| [1-80] IPR005576 | 2.5e-26 | RNA polymerase Rpb7, N-terminal | ||
| [79-193] IPR016027 | 3.3e-18 | Nucleic acid-binding, OB-fold-like | ||
| Orthology group | MCL14058 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS204856-TA
ATGTTTGTACTGTCGGAAATGAAAGATGTGCTAAGAGTTACACCTGAACACTTTCACCAAAGTCTAACAGAGTCAATAACAACATTATTAAACAGAAAACTTGCTAATAAGGTCGTTCTAAATGTGGGGCTCTGTATAGCATTATTTGATATAACCAATATAGGTCACTCATACATATTTCCTGGTGACGGATCGTCACACACTGAAGTGATATTTAGGTATATTGTGTTTCGTCCACTTGTTGAGGAAATACTTATAGGAAAAATAAGAAGTTGTAGCCGGGATGGGGTACATGTTACAATGGGTTTTTTTGATGACATTTTAATACCTGTGAATGCACTCCAACATCCATCTAGGTTTGATGAAACAGATCAAGCCTGGGTTTGGGAATATCCCAAAGAAGATGGAGAAAAGCATGATCTATTCATGGATTCAGGTGAATCTATTAGATTTAGAGTAACAAGTGAGGAGTTTGAAGAAAGTTTGCCAACTGGTCCACCAGGATCTGAACGTCCCACTCAAGCAGTGGCACCATATAGATTAATTGGTGGTATTAATGAACCGGGCCTAGGATTATTGACCTGGTGGGTGACACCAGAACAGGATGAAGGTGATGAAGAAGAACAAGAAGATGTTGAATAA
>DPOGS204856-PA
MFVLSEMKDVLRVTPEHFHQSLTESITTLLNRKLANKVVLNVGLCIALFDITNIGHSYIFPGDGSSHTEVIFRYIVFRPLVEEILIGKIRSCSRDGVHVTMGFFDDILIPVNALQHPSRFDETDQAWVWEYPKEDGEKHDLFMDSGESIRFRVTSEEFEESLPTGPPGSERPTQAVAPYRLIGGINEPGLGLLTWWVTPEQDEGDEEEQEDVE-