| DPOGS205004 | ||
|---|---|---|
| Transcript | DPOGS205004-TA | 399 bp |
| Protein | DPOGS205004-PA | 132 aa |
| Genomic position | DPSCF300123 + 274730-275417 | |
| RNAseq coverage | 2120x (Rank: top 6%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL009464 | 1e-66 | 96.97% | |
| Bombyx | BGIBMGA010234-TA | 5e-55 | 90.15% | |
| Drosophila | RpII18-PA | 7e-43 | 83.50% | |
| EBI UniRef50 | UniRef50_Q24320 | 9e-41 | 83.50% | DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=29 Tax=Eukaryota RepID=RPAB2_DROME |
| NCBI RefSeq | NP_001040147.1 | 2e-53 | 90.15% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
| NCBI nr blastp | gi|114050977 | 5e-52 | 90.15% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
| NCBI nr blastx | gi|114050977 | 5e-63 | 90.84% | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 1.4e-74 | DNA-directed RNA polymerase activity | |
| GO:0003677 | 1.4e-74 | DNA binding | ||
| GO:0006351 | 1.4e-74 | transcription, DNA-dependent | ||
| GO:0030880 | 2.8e-50 | RNA polymerase complex | ||
| KEGG pathway | ame:410494 | 3e-49 | ||
| K03014 (RPB6) | maps-> | Huntington's disease | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [2-132] IPR006111 | 1.4e-74 | DNA-directed RNA polymerase, subunit K/RPABC2 | |
| [15-130] IPR012293 | 2.8e-50 | RNA polymerase subunit, RPB6/omega | ||
| [3-131] IPR006110 | 2.2e-47 | RNA polymerase, subunit omega/K/RPABC2 | ||
| Orthology group | MCL13200 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS205004-TA
ATGGCGGACGAGGAATTCGATGGAGAGGATGGGGGAGGAGATTATGACGACATTGTTGAAGAAGACAATAACATAGAAGAGGTTGAGGAACAAGAGGAAGATGGTTATAATGTTCAGTGTTTAGCTCCAGGGCAAGCCGGTGGTGGAGTAGAGAAATCTAAACGGATCACGACTAGATATATGACAAAATATGAAAGGGCAAGAGTATTAGGTACGAGAGCATTGCAAATAGCTATGTGCGCCCCCGTCATGGTGGAACTGGAAGGTGAAACCGACCCATTACAAATTGCAATGAAGGAATTGAAGCAGAGAAAGATTCCCATAATCATCCGAAGATATCTCCCTGACCACTCTTACGAAGATTGGAGTATAGATGAACTCATTATAATAGATCATTAG
>DPOGS205004-PA
MADEEFDGEDGGGDYDDIVEEDNNIEEVEEQEEDGYNVQCLAPGQAGGGVEKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDHSYEDWSIDELIIIDH-