| DPOGS205262 | ||
|---|---|---|
| Transcript | DPOGS205262-TA | 417 bp |
| Protein | DPOGS205262-PA | 138 aa |
| Genomic position | DPSCF300021 - 1369407-1370204 | |
| RNAseq coverage | 289x (Rank: top 38%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016201 | 3e-73 | 95.65% | |
| Bombyx | BGIBMGA011062-TA | 1e-58 | 93.10% | |
| Drosophila | LSm1-PA | 1e-49 | 74.07% | |
| EBI UniRef50 | UniRef50_Q17P42 | 5e-55 | 78.79% | Sm protein G, putative n=4 Tax=Culicidae RepID=Q17P42_AEDAE |
| NCBI RefSeq | NP_001091827.1 | 2e-69 | 92.75% | LSM1-like protein [Bombyx mori] |
| NCBI nr blastp | gi|148298867 | 5e-68 | 92.75% | LSM1-like protein [Bombyx mori] |
| NCBI nr blastx | gi|148298867 | 2e-67 | 92.75% | LSM1-like protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | nvi:100113778 | 9e-58 | ||
| K12620 (LSM1) | maps-> | RNA degradation | ||
| InterPro domain | [7-89] IPR010920 | 2.1e-18 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [12-80] IPR006649 | 4e-16 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [15-78] IPR001163 | 2.2e-13 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL13317 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS205262-TA
ATGTCTAATAATATTAATCCTTTAGCTGGAACTGCTCATTTGCTGGACGAACTGGATAAGAAATTAATGGTGTTACTGCGTGATGGAAGGACCTTGATCGGATACTTACGCTGCGTGGACCAGTTCGCAAACTTAGTTTTACATAAAACCATCGAGAGGATTCATGTGGGTCGTGAATACGGGGATATACCGCGGGGAATATTCATTGTTAGGGGGGAGAATGTTGTACTTTTAGGGGAAATTGATAAAGAGAAAGAAGAAAATCTTCCGTTAACAGAAGTCTCTGTAGATGACATTCTAGATGCTCAACGGCGAGAACAAGATACAAAGACGGAACAACAAAAATTATTGTCAAAAGCTCTTAAAGACCGGGGCCTTAATTTGATAGCTGACTTAGGCCATGATGATATGTTCTAA
>DPOGS205262-PA
MSNNINPLAGTAHLLDELDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGREYGDIPRGIFIVRGENVVLLGEIDKEKEENLPLTEVSVDDILDAQRREQDTKTEQQKLLSKALKDRGLNLIADLGHDDMF-