DPOGS205262 | ||
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Transcript | DPOGS205262-TA | 417 bp |
Protein | DPOGS205262-PA | 138 aa |
Genomic position | DPSCF300021 - 1369407-1370204 | |
RNAseq coverage | 289x (Rank: top 38%) |
Annotation | ||||
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Heliconius | HMEL016201 | 3e-73 | 95.65% |   |
Bombyx | BGIBMGA011062-TA | 1e-58 | 93.10% |   |
Drosophila | LSm1-PA | 1e-49 | 74.07% |   |
EBI UniRef50 | UniRef50_Q17P42 | 5e-55 | 78.79% | Sm protein G, putative n=4 Tax=Culicidae RepID=Q17P42_AEDAE |
NCBI RefSeq | NP_001091827.1 | 2e-69 | 92.75% | LSM1-like protein [Bombyx mori] |
NCBI nr blastp | gi|148298867 | 5e-68 | 92.75% | LSM1-like protein [Bombyx mori] |
NCBI nr blastx | gi|148298867 | 2e-67 | 92.75% | LSM1-like protein [Bombyx mori] |
Group | ||||
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KEGG pathway | nvi:100113778 | 9e-58 |   | |
  | K12620 (LSM1) | maps-> | RNA degradation | |
InterPro domain | [7-89] IPR010920 | 2.1e-18 | Like-Sm ribonucleoprotein (LSM)-related domain | |
[12-80] IPR006649 | 4e-16 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[15-78] IPR001163 | 2.2e-13 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL13317 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS205262-TA
ATGTCTAATAATATTAATCCTTTAGCTGGAACTGCTCATTTGCTGGACGAACTGGATAAGAAATTAATGGTGTTACTGCGTGATGGAAGGACCTTGATCGGATACTTACGCTGCGTGGACCAGTTCGCAAACTTAGTTTTACATAAAACCATCGAGAGGATTCATGTGGGTCGTGAATACGGGGATATACCGCGGGGAATATTCATTGTTAGGGGGGAGAATGTTGTACTTTTAGGGGAAATTGATAAAGAGAAAGAAGAAAATCTTCCGTTAACAGAAGTCTCTGTAGATGACATTCTAGATGCTCAACGGCGAGAACAAGATACAAAGACGGAACAACAAAAATTATTGTCAAAAGCTCTTAAAGACCGGGGCCTTAATTTGATAGCTGACTTAGGCCATGATGATATGTTCTAA
>DPOGS205262-PA
MSNNINPLAGTAHLLDELDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGREYGDIPRGIFIVRGENVVLLGEIDKEKEENLPLTEVSVDDILDAQRREQDTKTEQQKLLSKALKDRGLNLIADLGHDDMF-