DPOGS205944 | ||
---|---|---|
Transcript | DPOGS205944-TA | 525 bp |
Protein | DPOGS205944-PA | 174 aa |
Genomic position | DPSCF300156 + 198528-199118 | |
RNAseq coverage | 286x (Rank: top 38%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL008157 | 5e-76 | 74.71% |   |
Bombyx | BGIBMGA002829-TA | 7e-70 | 71.59% |   |
Drosophila | mRpL21-PA | 8e-44 | 54.17% |   |
EBI UniRef50 | UniRef50_Q9VVX4 | 8e-42 | 54.17% | Mitochondrial ribosomal protein L21 n=13 Tax=Drosophila RepID=Q9VVX4_DROME |
NCBI RefSeq | XP_002086336.1 | 2e-43 | 54.17% | GE22920 [Drosophila yakuba] |
NCBI nr blastp | gi|195477424 | 3e-42 | 54.17% | GE22920 [Drosophila yakuba] |
NCBI nr blastx | gi|195496319 | 1e-40 | 54.86% | GE22516 [Drosophila yakuba] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005840 | 3.7e-43 | ribosome | |
GO:0003723 | 3.7e-43 | RNA binding | ||
GO:0006412 | 3.7e-43 | translation | ||
GO:0005622 | 3.7e-43 | intracellular | ||
GO:0003735 | 3.7e-43 | structural constituent of ribosome | ||
KEGG pathway | dal:Dalk_4114 | 9e-11 |   | |
  | K02888 (RP-L21, rplU) | maps-> | Ribosome | |
InterPro domain | [57-164] IPR001787 | 3.7e-43 | Ribosomal protein L21 | |
Orthology group | MCL13181 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS205944-TA
ATGTCTCTATTACGAGCTGGTTTAAATAAACTGACTGGTATATTTCGTAATCAAGGTGGAATTCTATCAAGGCTGCTATCACAAGATGCAAGTCCAAGTGTCGTTAAAGAAACAAAAGAAGTCATAACCACCTGCAATAAATTGATAGAGGATAGAGTATCCCGAAACTTCGCAATAGTTCATCTACTGGGTAAACAGTGGCGTGTGACCGACGGAGACTTACTTGTCGTCGAAGGACACTGGCCACCCAATATAGGGGATAAAATAAGATTAGACAAAGTTCTACTGGCAGCTACAAAGGACTTCTCACTCATTGGGCGTCCTCTTGTCCAACCGGGCTTGGTCAATGTGACAGCTACAGTCATATCAAAGGGGCTCTCACACACAAAAACACATTTCAAGAAGAAGAGGAGGAAGCAGTATATGAAGATCCACTTCCAAAGATTACCGCAGACCATGTTAAGAATAAATACCGTAGAAATCGCAAACAGAATCAACGAAGCCCCCAAAAATGTGTACGAGTAA
>DPOGS205944-PA
MSLLRAGLNKLTGIFRNQGGILSRLLSQDASPSVVKETKEVITTCNKLIEDRVSRNFAIVHLLGKQWRVTDGDLLVVEGHWPPNIGDKIRLDKVLLAATKDFSLIGRPLVQPGLVNVTATVISKGLSHTKTHFKKKRRKQYMKIHFQRLPQTMLRINTVEIANRINEAPKNVYE-