| DPOGS206093 | ||
|---|---|---|
| Transcript | DPOGS206093-TA | 972 bp |
| Protein | DPOGS206093-PA | 323 aa |
| Genomic position | DPSCF300028 + 127366-128337 | |
| RNAseq coverage | 1600x (Rank: top 8%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | % | |||
| Bombyx | BGIBMGA006819-TA | 2e-148 | 81.60% | |
| Drosophila | Rad23-PA | 1e-74 | 43.03% | |
| EBI UniRef50 | UniRef50_D2CZY1 | 4e-146 | 81.60% | Nuclear excision repair protein Rad23 n=4 Tax=Coelomata RepID=D2CZY1_BOMMO |
| NCBI RefSeq | NP_001164652.1 | 7e-147 | 81.60% | nuclear excision repair protein rad23 [Bombyx mori] |
| NCBI nr blastp | gi|283945482 | 1e-145 | 81.60% | nuclear excision repair protein rad23 [Bombyx mori] |
| NCBI nr blastx | gi|283945482 | 3e-140 | 81.60% | nuclear excision repair protein rad23 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 2.7e-30 | nucleus | |
| GO:0006289 | 2.7e-30 | nucleotide-excision repair | ||
| GO:0043161 | 9.6e-28 | proteasomal ubiquitin-dependent protein catabolic process | ||
| GO:0003684 | 9.6e-28 | damaged DNA binding | ||
| GO:0005515 | 4e-20 | protein binding | ||
| KEGG pathway | phu:Phum_PHUM577750 | 1e-93 | ||
| K10839 (RAD23, HR23) | maps-> | Nucleotide excision repair | ||
| Protein processing in endoplasmic reticulum | ||||
| InterPro domain | [219-241] IPR004806 | 2.7e-30 | UV excision repair protein Rad23 | |
| [189-253] IPR015360 | 9.6e-28 | XPC-binding domain | ||
| [6-77] IPR000626 | 4e-20 | Ubiquitin | ||
| [104-176] IPR009060 | 5.4e-15 | UBA-like | ||
| [136-170] IPR000449 | 2.6e-11 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal | ||
| [135-172] IPR015940 | 6e-10 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote | ||
| [191-234] IPR006636 | 6.4e-08 | Heat shock chaperonin-binding | ||
| Orthology group | MCL12480 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS206093-TA
ATGTTACTGACTTTAAAAACTCTTCAACAACAAACTTTTCAGATAGAAATAGACCCTCAAGAGACTGTCAAAGCGCTGAAGCTTAAAATTGAAGTGGAAAAAGGTAAAGATTATGCGGCAGACAATCAAAGACTTATTTATGCGGGTAAGATTCTTCTCGATGATAATAAACTGCATACGTATAATATAGATGAAAAGAAATTCATCGTTATCATGGTGACAAAACCGAAAACTTCCGATAATCAACAAGCGTCGTCGACCTCGGCGCCAGAAGCCGGGGAAAGTGCGTCAACTGAAAGCGGCGACGGCAAAAGTAAAGTGGTCGAAGAAAAACCAAAACCTCAGCCTGCAGCGGAACCTGAGCGTGCATCTGAACCACCAGTAACATCAAATGAGCCAGATTTTGAATCAACAGTGCAAAGCATTATGGATATGGGCTATAATAGACAACAAGTAGAACAAGCTCTCCGTGCTTCATTTAATAATCGTGAAAGAGCTGTAGAATATCTCATAACAGGAATCCCTGAAGAGCTACTTCAAGAACAGGAAGCTGAAGAAAGTGCTGATGAAGACCCCTTGGGCTTTCTTCGGGATCAACCACAGTTTCAACAAATGCGTGCAGTGATTCAACAGAATCCTAATTTACTGAATACTGTGTTGCAGCAAATTGGTCAAACAAACCCAGCTTTACTTCAAGCTATTAGTCAGCATCAACAGGCTTTTGTGAGAATGTTGAATGAGCCTGTGAACCCATCTGCAGCTGGAGCCGTAGCCGAGGAGGCAGTGCCTGACAATCCAGTGCCCCAACAGCCTCAAAATGTTATTCAAGTATCTCCTCAAGACAAAGAGGCTATTGAAAGATTAAAAGCCTTAGGTTTTCCAGAACATATGGTTATTCAAGCGTATTTTGCGTGTGAGAAAAACGAAAATCTTGCTGCAAATTTCTTGTTGTCGCAAAATTTTGATGATTAA
>DPOGS206093-PA
MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKDYAADNQRLIYAGKILLDDNKLHTYNIDEKKFIVIMVTKPKTSDNQQASSTSAPEAGESASTESGDGKSKVVEEKPKPQPAAEPERASEPPVTSNEPDFESTVQSIMDMGYNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESADEDPLGFLRDQPQFQQMRAVIQQNPNLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVIQVSPQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD-