DPOGS206370 | ||
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Transcript | DPOGS206370-TA | 573 bp |
Protein | DPOGS206370-PA | 190 aa |
Genomic position | DPSCF300192 - 260935-262391 | |
RNAseq coverage | 1747x (Rank: top 7%) |
Annotation | ||||
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Heliconius | HMEL009024 | 5e-97 | 87.37% |   |
Bombyx | BGIBMGA005769-TA | 7e-77 | 88.59% |   |
Drosophila | SsRbeta-PA | 9e-63 | 58.73% |   |
EBI UniRef50 | UniRef50_C4N188 | 4e-61 | 58.42% | Translocon-associated complex TRAP, beta subunit (Fragment) n=1 Tax=Stomoxys calcitrans RepID=C4N188_STOCA |
NCBI RefSeq | NP_001040332.1 | 5e-92 | 84.21% | signal sequence receptor beta subunit [Bombyx mori] |
NCBI nr blastp | gi|114052941 | 8e-91 | 84.21% | signal sequence receptor beta subunit precursor [Bombyx mori] |
NCBI nr blastx | gi|114052941 | 1e-87 | 84.21% | signal sequence receptor beta subunit precursor [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0005783 | 6.8e-107 | endoplasmic reticulum | |
GO:0016021 | 6.8e-107 | integral to membrane | ||
KEGG pathway | tca:658071 | 6e-68 |   | |
  | K13250 (SSR2) | maps-> | Protein processing in endoplasmic reticulum | |
InterPro domain | [1-189] IPR008856 | 6.8e-107 | Translocon-associated beta | |
Orthology group | MCL13573 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS206370-TA
ATGATTGCTAAATTATTGTCGGTGTTTCTGCTCCTGGCTGCGGCTTTCGCAGCGGAGGAAGAGCCAGCGGTCGCGAGATTATTAATATCTAAACAAGTGTTAAACAAATATTTAGTTGAAAACATGGACATTTTAATAAAGTACACATTATTCAACGTGGGTACAGCCCCAGCTGTGGATGTTAAACTTGTAGATAATGGATTCCATCCCGAAGTTTTCGCAGTGGTTGGAGGACAGCTCTCAGCTCACATAGACAGGATACCACCCCAAACTAATGTCTCACACGTCGTTACTGTAAGATCCAACAGATATGGCTACTTCAACTTCACAGCAGCAGAAGTAACATACAAACCCAGTGAAGATTCTGCCGAGGTTCAATACTCAATCAGTAGTGCCCCCGGTGAAGGCACAATCGTAGCCTTCAAGGACTATGACCGCAAGTTCTCATCTCACATCCTGGACTGGGCGGCCTTTGCTGTTATGACACTCCCATCACTGGCTATCCCCTTCGGACTTTGGTATTCATCTAAGAGCAAATACGAGAAACTCTCGAAACCTAAAAAGACTCACTAG
>DPOGS206370-PA
MIAKLLSVFLLLAAAFAAEEEPAVARLLISKQVLNKYLVENMDILIKYTLFNVGTAPAVDVKLVDNGFHPEVFAVVGGQLSAHIDRIPPQTNVSHVVTVRSNRYGYFNFTAAEVTYKPSEDSAEVQYSISSAPGEGTIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLSKPKKTH-