| DPOGS206402 | ||
|---|---|---|
| Transcript | DPOGS206402-TA | 204 bp |
| Protein | DPOGS206402-PA | 67 aa |
| Genomic position | DPSCF300192 + 310613-312943 | |
| RNAseq coverage | 2x (Rank: top 91%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013313 | 5e-13 | 70.45% | |
| Bombyx | BGIBMGA005800-TA | 8e-22 | 80.36% | |
| Drosophila | nAcRalpha-30D-PE | 8e-19 | 89.36% | |
| EBI UniRef50 | UniRef50_B4Q883 | 2e-16 | 89.36% | GD22333 n=10 Tax=Endopterygota RepID=B4Q883_DROSI |
| NCBI RefSeq | NP_001166814.1 | 3e-19 | 93.62% | nicotinic acetylcholine receptor subunit alpha 6 isoform 4 [Bombyx mori] |
| NCBI nr blastp | gi|262091808 | 4e-18 | 91.67% | nicotinic acetylcholine receptor alpha 6 precursor variant [Plutella xylostella] |
| NCBI nr blastx | gi|284927834 | 7e-17 | 91.67% | nicotinic acetylcholine receptor alpha 6 isoform III [Plutella xylostella] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016021 | 1.4e-24 | integral to membrane | |
| GO:0006811 | 1.4e-24 | ion transport | ||
| GO:0016020 | 7.9e-10 | membrane | ||
| GO:0006810 | 7.9e-10 | transport | ||
| GO:0005230 | 7.9e-10 | extracellular ligand-gated ion channel activity | ||
| KEGG pathway | ptr:467639 | 6e-08 | ||
| K04809 (CHRNA7) | maps-> | Neuroactive ligand-receptor interaction | ||
| Calcium signaling pathway | ||||
| InterPro domain | [14-59] IPR006201 | 1.4e-24 | Neurotransmitter-gated ion-channel | |
| [20-65] IPR006202 | 7.9e-10 | Neurotransmitter-gated ion-channel ligand-binding | ||
| Orthology group | MCL22106 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS206402-TA
ATGAGTGTTTATTGCTGGTCCTTCAAGCCGGACTCTATATCGGAACAAGGACCCCACGAAAAGCGTCTATTGAACGCCCTGCTCAATTCCTACAACACTCTGGAGCGACCAGTCGCCAACGAGAGTGAACCACTAGAGGTCAAATTTGGGCTCACACTCCAACAGATCATTGACGTGAATGGCATCTCCAAAGAATTACTGTAA
>DPOGS206402-PA
MSVYCWSFKPDSISEQGPHEKRLLNALLNSYNTLERPVANESEPLEVKFGLTLQQIIDVNGISKELL-