MonarchBase - Protein-coding gene

DPOGS206535
Transcript	DPOGS206535-TA	5805 bp
Protein	DPOGS206535-PA	1934 aa
Genomic position	DPSCF300190 - 195251-204248
RNAseq coverage	3574x (Rank: top 3%)

Annotation
*Heliconius*	HMEL002285	74.43%
*Bombyx*	BGIBMGA014039-TA	65.58%
*Drosophila*	Cg25C-PB	51.33%
EBI UniRef50	UniRef50_P08120	51.33%	Collagen alpha-1(IV) chain n=16 Tax=Diptera RepID=CO4A1_DROME
NCBI RefSeq	XP_001962982.1	52.82%	GF15711 [Drosophila ananassae]
NCBI nr blastp	gi\|328723513	55.76%	PREDICTED: collagen alpha-1(IV) chain-like [Acyrthosiphon pisum]
NCBI nr blastx	gi\|383858176	58.68%	PREDICTED: collagen alpha-1(IV) chain-like [Megachile rotundata]

Group
Gene Ontology	GO:0005201	3.4e-117	extracellular matrix structural constituent
	GO:0005581	3.4e-117	collagen
	GO:0005488	2.4e-47	binding
KEGG pathway	dpo:Dpse_GA17987	0.0
	K06237 (COL4A)	maps->	Small cell lung cancer
			Pathways in cancer
			Amoebiasis
			Focal adhesion
			ECM-receptor interaction
InterPro domain	[1709-1932] IPR001442	3.4e-117	Collagen IV, non-collagenous
	[1815-1932] IPR016187	2.4e-47	C-type lectin fold
	[1320-1378] IPR008160	4e-11	Collagen triple helix repeat
Orthology group	MCL10127		Multiple-copy universal gene

Nucleotide sequence:

>DPOGS206535-TA
ATGAAGTTAGCAGGATTCGTTATTCGATCGTTTGTTCAAGTTCAAGATCTCGTTGAAGTCTTTTCAATGATCAATTCTTGGTTAGTTCTTAGAGTAGAAGTTACAGAGGCACTTACAGCAGATACAGGAGCCGAAATCCTGGAGAGAAGGAGGAGAACGGGCACAAGGTGTACAGCGAGGAGGCGCGCACGCGCCGGGCCCGACATGGCTGCGCCGCACTACTGGTCGCGCGCCCTCACACACAGGGACGAGCGCAGCGCCTCCCGTACAGTCAGGCGCGGGGCGGGGGCTCAGAGACCGCCGCCCGAGCGCTCCTCTTTCCTTAGTATCCCGGCTCAAACGGCGCGCGCGCACGGGACACTGGCGCAGCGCGCTTTGGGCCATGGCGGTCCACGTACTTTGCAACGAAACGAATATGAAAGAGGAGACGTCGAAGAAAATAATATTTATGATAATCAAGACTGGATGTATCAGAATAGTTACAATCCGCAACCAACAATAAATTCATACTATGGTTTATCTAGAAGGCAGGACTTACCGACACCCTCTGCCCCCCCTTCTCCTCCACCGGAAAGAGTACAGCCCTCAAGAAGTTTTGGACAAAACTTTGCTGTGTATGACCCAGTAACTCGTCAGCGGACAAATGCATTTGATCGTAATTGTACGGCCCCTGGCTGCTGTGTACCAAAATGTTTTGCAGAAAAGGGTAGTAGGGGTTTCCCAGGAATGCGGGGACCACCTGGAATCACAGGTCTACCAGGACACGTTGGCGCTGAAGGTCCACAGGGACTTAAGGGTCAAAAAGGTCAAGATGGACCACAAGGTCCTCGGGGTCCGCGAGGAGAAAAGGGTAAACCTGGAGCTCAAGGATTTATAGGCTTAGCAGGACCACCAGGTCCTCAAGGAGAACCTGGTATGCCAGGGATTCCTGGACGTGATGGTTGTAACGGAACTGATGGAGAACCTGGAATGGTGGGGATCAAAGGTTCACAGGGTCCACGTGGATTTGCTGGGCCTAAAGGTAACAAGGGTGATAAAGGAGAGCCGGCTTATATGGGTCGATACCCAAAAGGTGAAAAAGGAGAACCTGGAGCTGATGGTTTACAAGGCCAATCTGGCCCAGCTGGACCAACAGGTCCTCCAGGTTTGGCTGGTCCCAAAGGAATGACTGGACCTATGGGACCACCTGGATATAAAGGTGATAAAGGTCCTAAAGGATCTAAAGGACAATCTATTCAAGGTGATAAAGGAGACCGAGGTGACAAAGGTGACAGAGGACCCGGTTGTCCATCAACAACGTTACCTTCATTGGATAATAAAGGAGCAATAAAAGGTGTCAAAGGTGATATGGGATCAAAAGGTGAAAAGGGAGAACCTGGGAGAATGGGTGAAAAGGGAGAAACAGGTCCAATGGGGGAACCTGGCTTGCCTGGATTAATGGGCATTAAAGGAGAAAAGGGCTTAAGAGGAAATCCTGGGGAACGGGGTCGTGAAGGAATGTATGGTGAACCCGGACCTATGGGAAGAAAAGGTGATAGAGGCATTGATGGACTGAATGGTCTTCCCGGCCGACCGGGTTTGAAAGGAGAACCCGGCAGGGATGGAGCAACAGGTCTAATGGGCTTAAAAGGAGTGCCAGGTCCACCTGGTGGTCGAGCTGGAGCACGAGGTCCACCTGGGCCACCAGGTCCTCGGGGCTATATCGGCGTTGCTGGTGCACCAGGGTCTAGTGGTAGGCCCGGAGAAAATGGATTACCAGGACCTATGGGTCCAAGAGGTGGACAGGGAGAACCAGGTGACACAGGCATTGAAGGTCCAGCAGGTCAAAAAGGAGAAAAAGGAGAACCTGGTCTTGATGGCTTGCCTGGAGAAATAGGTCAACGAGGATATGATGGACCCATTGGTCCTCAAGGACCTAGGGGACTAAAAGGAGAAGAAGGTCAATCAATTCCTGGTGACAAGGGAAACAGTGGCCAACCAGGAATTCCAGGAGATAAGGGAGCCAAGGGCGAAAGAGGTTATCCAGGATTACGAGGTACACCTGGAAACTCTACATTAGGTACACCAGGAAGTCCCGGAGAAATGGGTCCACCTGGTGAAAAAGGTGAAAAAGGAACTCCTGGGTACGATGGAATACCTGGTAATCCTGGACAAAAAGGTGACATTGGAGGACGGTGTAACGAATGTCGACCTGGAAGTATGGGCGAAAAGGGAGACCGCGGTGCTGATGGTCTACCTGGTGAACGGGGTGAACGAGGTCACATCGGACCCATCGGGATGACCGGGGAGCGTGGTGCTGACGGTATGAATGGAATGCCTGGAGCTGCTGGAGCACCGGGTGAACGTGGATTGGACGGACCAATAGGACCACCAGGAATGAGGGGAGCAGATGCAATGATACCGTCCAATTTAGTAAAAGGACCTCCCGGAGAAAGAGGTGAACCAGGAGAAAAAGGAAACATGGGACCTAAGGGTGAAAGAGGACCTGATGGAATAATGGGTGATCGTGGATTAAATGGCATGCCCGGACAGAAGGGTGACATGGGTAGAATGGGACCTTCTGGTATAGATGGCACACCTGGTAGTGATGGAATACCGGGACGGCCAGGAATGAAAGGCATGTCCATCAAAGGTGAAAAAGGAATATCTGGTGATCAGGGTGAAAAAGGTGACAAAGGATTTTCTGGAAGACCAGGACTTAAAGGTGAACCTGGTCAATGTCCCAATGAGTTAAAAATTCGCACAAAGGGAGAAAAAGGCAACCCTGGCGTTCCAGGACCACAAGGACCATTAGGTATGAAGGGTGAAAAAGGTAATCAAGGGCCATTCGGTTTTACTGGTCCAAAGGGAGAGATGGGTTTACCAGGACGAGCTGGACCGGTAGGTCCACGTGGTCTTCCGGGTTTCAAAGGCGATAAAGGTGAAATGGGTTCAATGGGATTTCCGGGAACACCAGGGGATTTAGGCCCTAGAGGTTTTCCAGGGTTACCAGGATTAAAAGGAGACAAAGGTGAGATTGGTCCTTCTATGCCTGGACCACCTGGACCTGCTGGATTAAAGGGAGATAAAGGAGAACAAGGTCCAAGAGGTCAACCTGGAATAGAAGGAAAGGATGGTCCTCCAGGATTAGCTGGCTTACAAGGTGAAAAAGGTGATATGGGATTAATAGGAAGGCAAGGTTATCCAGGACCTATTGGATTAAAGGGCGAACCGGGTCCTATAGGACCATCCGGAGTTCCGGGCATTCCTGGTACGCCAGGAAGAGATGGACCTAAAGGTCAACAAGGATTTCCCGGTCCACCTGGTAAACCTGGTGTAATTGGCTTACCTGGACAAAAAGGTGAACCAGGTATTCAAGGTCCAGATGGCCCGAAAGGTTTCCCAGGACCTCGTGGTCATGTTGGTATGCAAGGGCAAACTGGTCTTGATGGAAGTCCCGGTGAAAAAGGAGATAAGGGTGATATAGGATTCCCGGGTGAGCCTGGTAGACCTGGTCTTGATGGACCTAGAGGATTAGCTGGTGCACCTGGTGAGAAAGGTGATATAGGTTTCCCAGGAAACCCTGGGTTGAATGGATTTATTGGACCAGCTGGCCCAAGAGGTGATATAGGCTTCAAGGGTTCCAGGGGACCAAAAGGAGAACCTGGTTTAGCTTCAGAAAAGGGAGAAAAAGGAGATCAAGGTTTTCCAGGATTACCTGGTGTTGATGGAAGACCTGGGCAAGATGGAGAAAAAGGTGACAAAGGTTTCCCTGGCTATCCAGGTCAAGGCATTCCAGGAAGTCAAGGTGAAAAGGGAGATGCAGGTTTGCCTGGAAAAATGGGTTTTCCTGGTATTCCTGGCGATAAAGGCGACCGAGGCTTTCCAGGACTGGCAGGTTTAAAGGGAGAAAGAGGCCCTGCAGGCAAAGACGGTTTGCCAGGAATGCCGGGAAGAGATGGCAGTCCTGGTGCTCCAGGCCAAGATGGTTTACCAGGAATGGATGGCGAAAAGGGTGAAAGAGGTGATCGAGGATTACCAGGTCGTGATGGTCTTGATGGATTGAAAGGTGACCAGGGTATTGCTGGACCACCAGGGCCAATAGGACCAATGGGTTTTCCGGGTCCTAAAGGAGACATTGGTTTACCTGGGCCATCTATAAATATCAAAGGTGAAAAGGGAGATATAGGTTTTCCCGGTATTACTGGACTTCAAGGAGATAAGGGTGATCGAGGTAGAGATGGCTTCCAAGGTCTACAAGGGGAAAAGGGTGATCAAGGATTCACTGGACAAAAGGGTGAAATGGGTAGAATGGGCGCCATGGGTGAAAGAGGTGAAAGAGGTCCAATTGGACCGACTGGTATTCCTGGACTCACAGTAAAAGGTGAAAAAGGTTTACCTGGAAATAACGGAAAACACGGCAGACCTGGCATGCGCGGTGCTACTGGAGAAAAAGGAGAACAAGGATTACCTGGACTTCCAGGTCCAATTGGGCGCTCTGGCATGCCAGGAACACCGGGACCTAGAGGTGAACCCGGTGAACCAGGAAGTGAAGGAGTCGCAGGACCCCCTGGGTTTGACGGTCCTCCGGGGCTACAAGGTCGTCCTGGCGAATATGGTGAAAAAGGTAACAAGGGTGATAAGGGTGCTGTTGGTTTTGGTTTACCTGGCCCGAAAGGAGACACTGGCTTGCCAGGATTACCGGGTTTAAATGGTGAAAAAGGTGATAAAGGAGATCAGGGTTTCGATGGATTAGTTGGAGAGATGGGTGAGAAAGGTAACCAAGGAGAAAAAGGTGACAGAGGCTATCCTGGTCGGCCTGGAATTCCTGGCCTTGATGGTGTAAAAGGAGATAAGGGAGAAGCGGCTGCTATAGTTTATGGAAGTAAGGGAGAACCAGGACCAAGAGGTCCTCCTGGATTGAATGGTCCACCTGGACTTGACGGATTACCTGGTCCTAAAGGCTGGGATGGTGCTCCAGGCATGAAAGGAGATAAAGGTTTCCAAGGACCTATGGGCCCACCAGGCTTACCAGGACCTCAAGGAATAATGGGTATTCAAGGTGAACGTGGTGAAACAGGTCGTATGGGATTACAAGGTGTACCTGGAATACCTGGTGCTCCTTGTGCTACTACAGACTATCTTACTGGCATCCTTTTAGTGCGTCATAGTCAAACAAACATAGTACCCCAATGTGAACCCGGACATATTAAATTGTGGGATGGCTATTCCTTACTTTACATTGATGGAAATGAAAAGGCTCATAATCAAGATCTGGGATATGCTGGATCTTGTGTAAGAAAGTTCAGTACCATGCCATTCCTTTTCTGTGATCTTAATGATGTATGCAATTACGCAAGTCGAAATGATCGCAGTTATTGGCTTTCTACAAATTTGCCGATACCCATGATGCCAGTAAACAACAATGAAATTTCACGATATATTTCAAGATGTGTTGTTTGTGAGGTTCCAGCCAATGTCATAGCTGTTCACAGTCAAACTCTTGATATACCTAGTTGTCCAGTGGGTTGGAACTCATTATGGATTGGATACAGTTTTGTTATGCACACTGGAGCTGGTGGACAAGGCGGTGGTCAAGCCCTTGCTAGTCCGGGATCTTGTCTTGAAGACTTCCGAGCGACACCATTTATTGAATGTAACGGTGAAGGTGGTACTTGCCATCATTTCGCCAATAAACTTAGTTTTTGGCTAACAACTATAGATGATAAGAAGCAATTCGCAAAACCAGAGCGTGAAACTCTTAAATCTGGACGACTATTGCAGCGAGTGTCTAGATGCGCTGTTTGCATTAAGAATACCACATAG

Protein sequence:

>DPOGS206535-PA
MKLAGFVIRSFVQVQDLVEVFSMINSWLVLRVEVTEALTADTGAEILERRRRTGTRCTARRRARAGPDMAAPHYWSRALTHRDERSASRTVRRGAGAQRPPPERSSFLSIPAQTARAHGTLAQRALGHGGPRTLQRNEYERGDVEENNIYDNQDWMYQNSYNPQPTINSYYGLSRRQDLPTPSAPPSPPPERVQPSRSFGQNFAVYDPVTRQRTNAFDRNCTAPGCCVPKCFAEKGSRGFPGMRGPPGITGLPGHVGAEGPQGLKGQKGQDGPQGPRGPRGEKGKPGAQGFIGLAGPPGPQGEPGMPGIPGRDGCNGTDGEPGMVGIKGSQGPRGFAGPKGNKGDKGEPAYMGRYPKGEKGEPGADGLQGQSGPAGPTGPPGLAGPKGMTGPMGPPGYKGDKGPKGSKGQSIQGDKGDRGDKGDRGPGCPSTTLPSLDNKGAIKGVKGDMGSKGEKGEPGRMGEKGETGPMGEPGLPGLMGIKGEKGLRGNPGERGREGMYGEPGPMGRKGDRGIDGLNGLPGRPGLKGEPGRDGATGLMGLKGVPGPPGGRAGARGPPGPPGPRGYIGVAGAPGSSGRPGENGLPGPMGPRGGQGEPGDTGIEGPAGQKGEKGEPGLDGLPGEIGQRGYDGPIGPQGPRGLKGEEGQSIPGDKGNSGQPGIPGDKGAKGERGYPGLRGTPGNSTLGTPGSPGEMGPPGEKGEKGTPGYDGIPGNPGQKGDIGGRCNECRPGSMGEKGDRGADGLPGERGERGHIGPIGMTGERGADGMNGMPGAAGAPGERGLDGPIGPPGMRGADAMIPSNLVKGPPGERGEPGEKGNMGPKGERGPDGIMGDRGLNGMPGQKGDMGRMGPSGIDGTPGSDGIPGRPGMKGMSIKGEKGISGDQGEKGDKGFSGRPGLKGEPGQCPNELKIRTKGEKGNPGVPGPQGPLGMKGEKGNQGPFGFTGPKGEMGLPGRAGPVGPRGLPGFKGDKGEMGSMGFPGTPGDLGPRGFPGLPGLKGDKGEIGPSMPGPPGPAGLKGDKGEQGPRGQPGIEGKDGPPGLAGLQGEKGDMGLIGRQGYPGPIGLKGEPGPIGPSGVPGIPGTPGRDGPKGQQGFPGPPGKPGVIGLPGQKGEPGIQGPDGPKGFPGPRGHVGMQGQTGLDGSPGEKGDKGDIGFPGEPGRPGLDGPRGLAGAPGEKGDIGFPGNPGLNGFIGPAGPRGDIGFKGSRGPKGEPGLASEKGEKGDQGFPGLPGVDGRPGQDGEKGDKGFPGYPGQGIPGSQGEKGDAGLPGKMGFPGIPGDKGDRGFPGLAGLKGERGPAGKDGLPGMPGRDGSPGAPGQDGLPGMDGEKGERGDRGLPGRDGLDGLKGDQGIAGPPGPIGPMGFPGPKGDIGLPGPSINIKGEKGDIGFPGITGLQGDKGDRGRDGFQGLQGEKGDQGFTGQKGEMGRMGAMGERGERGPIGPTGIPGLTVKGEKGLPGNNGKHGRPGMRGATGEKGEQGLPGLPGPIGRSGMPGTPGPRGEPGEPGSEGVAGPPGFDGPPGLQGRPGEYGEKGNKGDKGAVGFGLPGPKGDTGLPGLPGLNGEKGDKGDQGFDGLVGEMGEKGNQGEKGDRGYPGRPGIPGLDGVKGDKGEAAAIVYGSKGEPGPRGPPGLNGPPGLDGLPGPKGWDGAPGMKGDKGFQGPMGPPGLPGPQGIMGIQGERGETGRMGLQGVPGIPGAPCATTDYLTGILLVRHSQTNIVPQCEPGHIKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTNLPIPMMPVNNNEISRYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNSLWIGYSFVMHTGAGGQGGGQALASPGSCLEDFRATPFIECNGEGGTCHHFANKLSFWLTTIDDKKQFAKPERETLKSGRLLQRVSRCAVCIKNTT-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: