| DPOGS207009 | ||
|---|---|---|
| Transcript | DPOGS207009-TA | 507 bp |
| Protein | DPOGS207009-PA | 168 aa |
| Genomic position | DPSCF300001 + 1122445-1122951 | |
| RNAseq coverage | 321x (Rank: top 36%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL015462 | 3e-94 | 98.81% | |
| Bombyx | BGIBMGA012934-TA | 5e-61 | 98.23% | |
| Drosophila | Arc-p20-PA | 4e-78 | 79.76% | |
| EBI UniRef50 | UniRef50_P59998 | 4e-76 | 82.14% | Actin-related protein 2/3 complex subunit 4 n=78 Tax=root RepID=ARPC4_HUMAN |
| NCBI RefSeq | NP_001040449.1 | 5e-90 | 95.24% | actin related protein 2/3 complex subunit 4 [Bombyx mori] |
| NCBI nr blastp | gi|114052038 | 8e-89 | 95.24% | actin related protein 2/3 complex subunit 4 [Bombyx mori] |
| NCBI nr blastx | gi|114052038 | 4e-85 | 95.24% | actin related protein 2/3 complex subunit 4 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005856 | 7.3e-133 | cytoskeleton | |
| GO:0030041 | 7.3e-133 | actin filament polymerization | ||
| KEGG pathway | oaa:100075245 | 3e-78 | ||
| K05755 (ARPC4) | maps-> | Shigellosis | ||
| Pathogenic Escherichia coli infection | ||||
| Regulation of actin cytoskeleton | ||||
| Bacterial invasion of epithelial cells | ||||
| Fc gamma R-mediated phagocytosis | ||||
| InterPro domain | [1-168] IPR008384 | 7.3e-133 | ARP23 complex 20kDa subunit | |
| Orthology group | MCL13304 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207009-TA
ATGTCGGCTACTCTAAAACCATATTTGACGGCGGTCCGCCACACTCTTACTTCCGCTATGTGCCTAGAACACTTTTCGTCCCAGGTTGTAGAACGATACAATAAACCAGAAGTGGAAGTGGGAACAAGCAAAGAATTGTTATTAAACCCAGTGATAATTTCACGCAATGTTAATGAGAAAGTTTTGATTGAGTCATCCATTAATTCAATTAGGATAAGTATTATGATTAAACAAGCCGATGAGATTGAAAAGATTTTGTGTAAAAAATTCATGAGGTTCATGATGATGCGAGCGGAAAACTTTATCGTGCTTCGGCGGAAGCCGGTTGATGGTTACCATATCAGTTTCCTGATAACAAATTTCCACACTGAACAAATGTATAAACATAAATTGGTTGACTTTGTTATTTACTTCATGGAAGAAATTGATAAAGAAATCAGTGAAATGAAATTAGCGGTCAATGCGCGTGCCAGAATTTGTTCAGAAGAATTTTTGAAGAGATTTTGA
>DPOGS207009-PA
MSATLKPYLTAVRHTLTSAMCLEHFSSQVVERYNKPEVEVGTSKELLLNPVIISRNVNEKVLIESSINSIRISIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKRF-