DPOGS207114 | ||
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Transcript | DPOGS207114-TA | 819 bp |
Protein | DPOGS207114-PA | 272 aa |
Genomic position | DPSCF300001 + 3295832-3297646 | |
RNAseq coverage | 34040x (Rank: top 0%) |
Annotation | ||||
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Heliconius | HMEL013260 | 9e-88 | 71.43% |   |
Bombyx | BGIBMGA013076-TA | 6e-101 | 75.46% |   |
Drosophila | RpL6-PB | 5e-71 | 57.72% |   |
EBI UniRef50 | UniRef50_E0VHR0 | 2e-76 | 56.45% | 60S ribosomal protein L6, putative n=8 Tax=Bilateria RepID=E0VHR0_PEDHC |
NCBI RefSeq | NP_001037132.1 | 3e-109 | 79.12% | ribosomal protein L6 [Bombyx mori] |
NCBI nr blastp | gi|315115357 | 4e-126 | 87.45% | ribosomal protein L6 [Euphydryas aurinia] |
NCBI nr blastx | gi|315115357 | 9e-136 | 87.50% | ribosomal protein L6 [Euphydryas aurinia] |
Group | ||||
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Gene Ontology | GO:0005840 | 1.8e-101 | ribosome | |
GO:0006412 | 1.8e-101 | translation | ||
GO:0005622 | 1.8e-101 | intracellular | ||
GO:0003735 | 1.8e-101 | structural constituent of ribosome | ||
KEGG pathway | nvi:100119262 | 9e-83 |   | |
  | K02934 (RP-L6e, RPL6) | maps-> | Ribosome | |
InterPro domain | [16-272] IPR000915 | 1.8e-101 | Ribosomal protein L6E | |
[118-204] IPR014722 | 2.3e-27 | Translation protein SH3-like, subgroup | ||
[22-75] IPR005568 | 5.2e-15 | Ribosomal protein L6, N-terminal | ||
Orthology group | MCL12167 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS207114-TA
ATGGCTCCAGCTCAGCCCAAGGCGGTGGCTAAGGCTCCCGCTGCCCCAGCAGGCGGTGTTCAGAAGGCCAAGGTTGGCAAACCAAGGAACTATGATTTGGGAAATGGAATCATGAGATTCTCCAAGACCAAAATGTTTCACAAGAAGGCCAAGTACAAGTTCATCGGCAAGAAGCACCCTAAAGCTGAGAAGCCCAAGAAACTAGCAGTGGTTGTTAAGCCTATTGGCGGAGACAAGAATGGAGGCACCCGTAGGGTTCTGATCAAGAAGAGGAGGTCATTCTACCCTACCCAGGATAAAATCACCACCCGTTCCCACCACAAGACATTTAGCAAGCACGTGCGTCGCACACGGCCAAATCTTACGCCTGGCACAGTGTGCATTCTGTTGGCTGGTAGACACGCCGGCAAACGCGTTGTACTGCTGTCGGTGATGCCCAGTGGACTCTTGCTTGTCACTGGACCTTTTGCTTTCAACTCCTGCCCGCTTCGCCGCATTCCGCAGCGCTATGTCATCGGAACTAGCACCAAGGTGGACTTAGGTGATTTCAAGCTCCCTGAACACCTTGACGACGCTTACTTCAAGAAGAACAAGAAGAGCGTCAAGCGCAGTGTTAAGCGCAAGCAGGGCGAGGATATCTTCGCCACCAAGAAAGAGAAATATGCTCCATCAGAACAGCGCAAGGTTGACCAGAAGGCGGTTGACGAGGCTGTAATCAAGGCTATCGGTGCACGTGCAGACAAGAAGTTGCTTCGAGGATACCTCAAGTCCTCATTTGGACTGCGTTCCAGCCAGTACCCTCACCGGCTACGGTTCTAG
>DPOGS207114-PA
MAPAQPKAVAKAPAAPAGGVQKAKVGKPRNYDLGNGIMRFSKTKMFHKKAKYKFIGKKHPKAEKPKKLAVVVKPIGGDKNGGTRRVLIKKRRSFYPTQDKITTRSHHKTFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLLSVMPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTKVDLGDFKLPEHLDDAYFKKNKKSVKRSVKRKQGEDIFATKKEKYAPSEQRKVDQKAVDEAVIKAIGARADKKLLRGYLKSSFGLRSSQYPHRLRF-