DPOGS207134 | ||
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Transcript | DPOGS207134-TA | 750 bp |
Protein | DPOGS207134-PA | 249 aa |
Genomic position | DPSCF300001 + 3727732-3730069 | |
RNAseq coverage | 872x (Rank: top 15%) |
Annotation | ||||
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Heliconius | HMEL011255 | 3e-45 | 61.36% |   |
Bombyx | BGIBMGA013096-TA | 4e-91 | 89.64% |   |
Drosophila | SF2-PA | 2e-83 | 82.81% |   |
EBI UniRef50 | UniRef50_Q9V3W7 | 3e-81 | 82.81% | LD40489p n=12 Tax=Drosophila RepID=Q9V3W7_DROME |
NCBI RefSeq | XP_393525.2 | 4e-90 | 77.92% | PREDICTED: similar to SF2 CG6987-PA [Apis mellifera] |
NCBI nr blastp | gi|66548276 | 7e-89 | 77.92% | PREDICTED: serine/arginine-rich splicing factor 1-like [Apis mellifera] |
NCBI nr blastx | gi|156545752 | 3e-104 | 78.80% | PREDICTED: serine/arginine-rich splicing factor 1-like [Nasonia vitripennis] |
Group | ||||
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Gene Ontology | GO:0003676 | 1.2e-21 | nucleic acid binding | |
GO:0000166 | 1.5e-21 | nucleotide binding | ||
KEGG pathway | ame:410040 | 1e-89 |   | |
  | K12890 (SFRS1_9) | maps-> | Spliceosome | |
InterPro domain | [13-82] IPR000504 | 1.2e-21 | RNA recognition motif domain | |
[8-96] IPR012677 | 1.5e-21 | Nucleotide-binding, alpha-beta plait | ||
Orthology group | MCL13390 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS207134-TA
ATGTCCGGAGGTAGCGGCGGTAGCAGGAATGAATGTAGAATATACGTTGGTAATCTGCCTCCTGATATTAGGACAAAGGACATCCAAGACCTTTTTTACAAATTTGGTAAAGTCACGTTCGTTGATTTGAAGAACAGAAAAGGACCACCGTTTGCATTCGTCGAATTTGAAGATCCTCGTGATGCAGATGATGCAGTTCGAGCCCGCGATGGCTATGACTACGATGGATATAGGCTACGTGTAGAGTTCCCTCGTGGAGGCGGCGGTGGTGCGCGCGGAGGACGCTCGCAGCCTGATCGCTTTGGGCCGCGTCCAGCAGCACGAGGCCCGCCCGCACGTCGCTCCGAGTATAGAGTGCTCGTCACAGGACTGCCGCCATCGGGCTCCTGGCAGGATCTGAAGGACCATATGCGCGAAGCGGGAGACGTGTGCTTCGCGGACACTTTCAAGGATGGCACTGGTGTGGTGGAATTCCTACGACACGAGGACATGAAGTACGCCGTCAAGAAGCTGGACGACTCGCGCTTTAGAAGCCACGAGGGAGAGGTGTCTTACATCCGGGTTAAGGAAGACTATGGCAGCGGCGGCGGCGGCGGGCTCAGGGACAGATCTCCTGAGTATCAGGCCGGGTCACCTTCGTACACCCGTCGGGGCTCCCCATCATACTCTCCGGTGCGTCGCTCGTACTCGCGCTCACGTTCCCGCTCTCGTTCCCGCTCGCCTGTAACCACCCGCCCACGAAACTACTGA
>DPOGS207134-PA
MSGGSGGSRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDPRDADDAVRARDGYDYDGYRLRVEFPRGGGGGARGGRSQPDRFGPRPAARGPPARRSEYRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGTGVVEFLRHEDMKYAVKKLDDSRFRSHEGEVSYIRVKEDYGSGGGGGLRDRSPEYQAGSPSYTRRGSPSYSPVRRSYSRSRSRSRSRSPVTTRPRNY-