| DPOGS207362 | ||
|---|---|---|
| Transcript | DPOGS207362-TA | 771 bp |
| Protein | DPOGS207362-PA | 256 aa |
| Genomic position | DPSCF300188 + 417792-419323 | |
| RNAseq coverage | 553x (Rank: top 23%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008868 | 8e-97 | 67.19% | |
| Bombyx | BGIBMGA008621-TA | 1e-109 | 75.39% | |
| Drosophila | scu-PA | 7e-87 | 58.82% | |
| EBI UniRef50 | UniRef50_B5XGY1 | 4e-83 | 59.45% | 3-hydroxyacyl-CoA dehydrogenase type-2 n=41 Tax=cellular organisms RepID=B5XGY1_SALSA |
| NCBI RefSeq | XP_971954.1 | 3e-90 | 62.50% | PREDICTED: similar to GA20113-PA [Tribolium castaneum] |
| NCBI nr blastp | gi|91078584 | 6e-89 | 62.50% | PREDICTED: similar to GA20113-PA [Tribolium castaneum] |
| NCBI nr blastx | gi|91078584 | 1e-85 | 62.50% | PREDICTED: similar to GA20113-PA [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005488 | 5.8e-65 | binding | |
| GO:0008152 | 2.5e-22 | metabolic process | ||
| GO:0016491 | 2.5e-22 | oxidoreductase activity | ||
| KEGG pathway | tca:660648 | 1e-89 | ||
| K08683 (HSD17B10) | maps-> | Alzheimer's disease | ||
| Valine, leucine and isoleucine degradation | ||||
| InterPro domain | [2-250] IPR016040 | 5.8e-65 | NAD(P)-binding domain | |
| [6-23] IPR002347 | 4.4e-28 | Glucose/ribitol dehydrogenase | ||
| [7-180] IPR002198 | 2.5e-22 | Short-chain dehydrogenase/reductase SDR | ||
| Orthology group | MCL25518 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207362-TA
ATGCTGAAGGGCATGGTTAGTTTGGTTACCGGTGGAGCGTCGGGATTAGGTAAAGCGACAGTAGAACGTCTAGCTAGGAATGGAGGCAGAGTTGTAATTCTTGATATCCAAGGTTCAAGGGCGCAGGAAGTGGCTAAAGATTTCGGTGAAGATGTGCAAGTCTCTGTTGGTTGTGTGACTTCAGAAGTGGATGTAAATAATGCTCTTAAAATAGCAAAGTCAAAATTCGGCAGACTTGATACATTAGTGAATTGTGCTGGTTTTGCGCAAACCAATCAAGTTTACAACTTTAACAAAGACCAACCTGGCGGAATGGAGTACTTTGAGAAATGTGTTAATGTAAACGCACTCGGTACATTTAACACTATAAGATTGGCTGTTGGATTAATGGGTAAGAACACACCAACGGAAGATGGTCAGAGAGGTGTTATAGTTAATACGGCAGCAACAATAGCTTATGAAGGGGACATCGGCCAGGCAGGATATGCCGCATCAATGGCAGCTGTAATAGGAATGACATTACCGTTGGCGAGAGATCTTGCATCTCAGGGAATTCGAGTTGTAACTATTGCACCCGGCGTATTCCAAACCCCTTTGGTATCGTATTTGCCGGAGAAAATGATAGAATTCATCAAACGTATGACGCCATTCCCTTCAAGATTGGGCAAGCCGGAAGAGTTTGCTCATTTAGTGACCAGCATTGTAGAAAATCCTATGTTGAATGGAGAGGTTATAAGATTAGATGGTGCACAAAGATGGTTCCCCCTATAA
>DPOGS207362-PA
MLKGMVSLVTGGASGLGKATVERLARNGGRVVILDIQGSRAQEVAKDFGEDVQVSVGCVTSEVDVNNALKIAKSKFGRLDTLVNCAGFAQTNQVYNFNKDQPGGMEYFEKCVNVNALGTFNTIRLAVGLMGKNTPTEDGQRGVIVNTAATIAYEGDIGQAGYAASMAAVIGMTLPLARDLASQGIRVVTIAPGVFQTPLVSYLPEKMIEFIKRMTPFPSRLGKPEEFAHLVTSIVENPMLNGEVIRLDGAQRWFPL-