| DPOGS207421 | ||
|---|---|---|
| Transcript | DPOGS207421-TA | 738 bp |
| Protein | DPOGS207421-PA | 245 aa |
| Genomic position | DPSCF300087 + 298643-300518 | |
| RNAseq coverage | 29330x (Rank: top 0%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL002070 | 3e-131 | 98.68% | |
| Bombyx | BGIBMGA009319-TA | 5e-135 | 95.90% | |
| Drosophila | RpS3-PA | 2e-105 | 79.06% | |
| EBI UniRef50 | UniRef50_P23396 | 4e-112 | 82.79% | 40S ribosomal protein S3 n=166 Tax=root RepID=RS3_HUMAN |
| NCBI RefSeq | NP_001037253.1 | 2e-133 | 95.90% | ribosomal protein S3 [Bombyx mori] |
| NCBI nr blastp | gi|1350990 | 1e-133 | 96.72% | ribosomal protein S3 [Manduca sexta] |
| NCBI nr blastx | gi|315115341 | 9e-129 | 96.68% | ribosomal protein S3 [Euphydryas aurinia] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006412 | 5.1e-71 | translation | |
| GO:0003735 | 5.1e-71 | structural constituent of ribosome | ||
| GO:0015935 | 5.1e-71 | small ribosomal subunit | ||
| GO:0005840 | 5.8e-28 | ribosome | ||
| GO:0005622 | 5.8e-28 | intracellular | ||
| GO:0003723 | 6.4e-25 | RNA binding | ||
| KEGG pathway | nvi:100114225 | 4e-114 | ||
| K02985 (RP-S3e, RPS3) | maps-> | Ribosome | ||
| InterPro domain | [9-211] IPR005703 | 5.1e-71 | Ribosomal protein S3, eukaryotic/archaeal | |
| [93-194] IPR001351 | 5.8e-28 | Ribosomal protein S3, C-terminal | ||
| [11-102] IPR009019 | 6.4e-25 | K Homology, prokaryotic type | ||
| [7-92] IPR015946 | 8.1e-14 | K homology domain-like, alpha/beta | ||
| [46-84] IPR004044 | 1e-05 | K Homology, type 2 | ||
| Orthology group | MCL13875 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207421-TA
ATGGCGGTGAACAACATTTCCAAAAAGCGAAAATTCGTCGGGGACGGAGTGTTCAAGGCTGAATTGAACGAGTTCCTTACTCGAGAGTTGGCCGAAGATGGCTACTCTGGCGTGGAGGTGCGTGTCACTCCTACCCGATCAGAAATCATCATTATGGCTACCAGGACACAAAGCGTACTGGGAGAGAAAGGTCGCAGGATCCGTGAATTGACGTCAGTTGTACAAAAGAGGTTTAATATCCCCGAGCACTCAGTCGAGCTTTACGCCGAGAAGGTCGCCACCCGCGGTCTCTGTGCCATCGCTCAAGCTGAATCCCTACGTTACAAACTCATTGGAGGATTGGCCGTCCGTCGTGCGTGCTACGGTGTGCTGAGATTCATCATGGAATCTGGTGCTCGTGGCTGTGAAGTCGTAGTCTCCGGCAAGTTGAGAGGTCAGAGAGCTAAGTCTATGAAGTTTGTGGATGGACTCATGATCCACTCGGGAGACCCCTGCAATGACTACGTTAACACCGCCACCCGACATGTACTGCTCAGACAAGGAGTACTTGGTATTAAGGTGAAGATCATGTTACCGTGGGACCAACAAGGCAAGAACGGACCCAAGAAGCCCCAGCCGGACCACATCTTGGTGACGGAGCCCAAGGACGAGCCCGCGCCCCTGGAGCCCACCTCGGACGTGAGGTCGTTGGCCCCGGTGCCCGCCGCCGCACCAACGCCCGCGCCTGTCGCTGTCTAG
>DPOGS207421-PA
MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDVRSLAPVPAAAPTPAPVAV-