DPOGS207453 | ||
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Transcript | DPOGS207453-TA | 453 bp |
Protein | DPOGS207453-PA | 150 aa |
Genomic position | DPSCF300051 - 279799-280251 | |
RNAseq coverage | 347x (Rank: top 34%) |
Annotation | ||||
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Heliconius | HMEL014845 | 4e-71 | 78.67% |   |
Bombyx | BGIBMGA001195-TA | 3e-72 | 80.00% |   |
Drosophila | mRpS6-PA | 5e-44 | 52.67% |   |
EBI UniRef50 | UniRef50_Q9VZD5 | 5e-42 | 52.67% | Probable 28S ribosomal protein S6, mitochondrial n=20 Tax=Endopterygota RepID=RT06_DROME |
NCBI RefSeq | XP_001648287.1 | 1e-47 | 58.55% | mitochondrial ribosomal protein, S6, putative [Aedes aegypti] |
NCBI nr blastp | gi|15705149 | 1e-70 | 81.33% | 28S ribosomal protein S6 precursor [Spodoptera frugiperda] |
NCBI nr blastx | gi|15705149 | 1e-68 | 81.33% | 28S ribosomal protein S6 precursor [Spodoptera frugiperda] |
Group | ||||
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Gene Ontology | GO:0005840 | 3.7e-16 | ribosome | |
GO:0006412 | 3.7e-16 | translation | ||
GO:0003735 | 3.7e-16 | structural constituent of ribosome | ||
GO:0019843 | 3.7e-16 | rRNA binding | ||
KEGG pathway |   | |||
InterPro domain | [1-108] IPR000529 | 3.7e-16 | Ribosomal protein S6 | |
[1-101] IPR014717 | 2.2e-09 | Translation elongation factor EF1B/ribosomal protein S6 | ||
Orthology group | MCL14418 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS207453-TA
ATGCCGACTTATGAATTAGCGTTAATGTTAAGGGCTATGCCAAAATCAGAGCTGAAAACGACCTTGACACGAGTATCGCATGCTGTGTTTAACCGTGGTGGTATTATAAGAAATATTGAAAATTTGGGTTTTAGACCGATTCCATACAAAACAAGTGCCCACGGCTTAGTGCATCGTGAAGCTAATTATTTCATTTTTAAATTAGATACAGCAACCAAAGCTGTAGCTGATCTTAGAGAGGAATACAGCAGAGATGTTGATATAGTTAGGCAACGTTTTTATAAAGTTCAAACGGATGAGCAACCAGCTTGTACGTTAGAGGAAGAAATGTTGCCGCCAGCTTACCGGGAGGAGGTGCAGAAAATGATTGAAGTTGGAAAAACACAAGTCAATAGATTCACATATAAATTCAAATACAATTCTGGTCTGGATTATTATCCATTCCAAAAATAG
>DPOGS207453-PA
MPTYELALMLRAMPKSELKTTLTRVSHAVFNRGGIIRNIENLGFRPIPYKTSAHGLVHREANYFIFKLDTATKAVADLREEYSRDVDIVRQRFYKVQTDEQPACTLEEEMLPPAYREEVQKMIEVGKTQVNRFTYKFKYNSGLDYYPFQK-