| DPOGS207534 | ||
|---|---|---|
| Transcript | DPOGS207534-TA | 633 bp |
| Protein | DPOGS207534-PA | 210 aa |
| Genomic position | DPSCF300177 + 591605-594591 | |
| RNAseq coverage | 310x (Rank: top 36%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017306 | 8e-109 | 90.95% | |
| Bombyx | BGIBMGA001898-TA | 1e-91 | 97.53% | |
| Drosophila | Rpb5-PA | 7e-116 | 92.86% | |
| EBI UniRef50 | UniRef50_P19388 | 5e-100 | 81.82% | DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=54 Tax=Eukaryota RepID=RPAB1_HUMAN |
| NCBI RefSeq | XP_001865530.1 | 3e-117 | 95.71% | DNA-directed RNA polymerase II 23 kDa polypeptide [Culex quinquefasciatus] |
| NCBI nr blastp | gi|31235339 | 4e-116 | 95.71% | AGAP010064-PA [Anopheles gambiae str. PEST] |
| NCBI nr blastx | gi|31235339 | 1e-111 | 95.71% | AGAP010064-PA [Anopheles gambiae str. PEST] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 3.2e-55 | DNA-directed RNA polymerase activity | |
| GO:0005634 | 3.2e-55 | nucleus | ||
| GO:0003677 | 3.2e-55 | DNA binding | ||
| GO:0006351 | 3.2e-55 | transcription, DNA-dependent | ||
| KEGG pathway | cqu:CpipJ_CPIJ015285 | 7e-117 | ||
| K03013 (RPB5) | maps-> | Huntington's disease | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [1-210] IPR014381 | 7.5e-126 | DNA-directed RNA polymerase, RPB5 subunit | |
| [1-137] IPR005571 | 3.2e-55 | RNA polymerase, Rpb5, N-terminal | ||
| [137-209] IPR000783 | 1.2e-33 | RNA polymerase, subunit H/Rpb5 C-terminal | ||
| Orthology group | MCL14290 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207534-TA
ATGGATGACGACGCCGAAACTTATAAACTGTGGCGTATTCGCAAAACTGTCATGCAGTTATGTCATGACCGTGGCTATTTGGTCACTCAGGATGAATTGGATCAAACATTAGACCAGTTTAAAGAACAATTTGGTGATAAACCAAGTGACAAGCGGCCAGCGAGAAGTGATCTTATAGTGCTTGTAGCCCACAACGATGATCCAACAGACCAAATGTTTGTGTTCTTTCCTGATGAAGCTAAAATTGGTATCAAAACTATCAAAACTTACTGTACAAGAATGCAGGAAGAGAACATACATAGAGCAATTGTAGTTGTTCAAGCAGGAATGACGCCATCTGCGAAACAGTCTCTAGTGGATATGGCTCCGAAGTATATTTTGGAACATTTCCTGGAATCCGAGCTTTTAATCAATATAACAGAACATGAATTGGTCCCAGAACATATTGTATTGACACCTGATGAGAAGCAAGAGTTATTGGCTAGATATAAATTAAAAGAGAACATGTTAATGAGAATACAGGCAGGGGATCCAGTGGCGAGATATTTTGGCCTGAAGAGAGGACAGGTCGTCAAAATTATAAGATCATCGGAAACGGCTGGGAGATATATATCATATAGATTAGTTTGTTAG
>DPOGS207534-PA
MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEHFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLVC-