MonarchBase - Protein-coding gene

DPOGS207841
Transcript	DPOGS207841-TA	5217 bp
Protein	DPOGS207841-PA	1738 aa
Genomic position	DPSCF300042 + 1137031-1151376
RNAseq coverage	613x (Rank: top 21%)

Annotation
*Heliconius*	HMEL015312	83.16%
*Bombyx*	BGIBMGA005523-TA	82.84%
*Drosophila*	Spt6-PA	58.08%
EBI UniRef50	UniRef50_E3WRH9	59.47%	Putative uncharacterized protein n=3 Tax=Pancrustacea RepID=E3WRH9_ANODA
NCBI RefSeq	XP_967189.2	61.73%	PREDICTED: similar to Spt6 CG12225-PA [Tribolium castaneum]
NCBI nr blastp	gi\|350412618	62.49%	PREDICTED: transcription elongation factor SPT6-like [Bombus impatiens]
NCBI nr blastx	gi\|350412618	51.80%	PREDICTED: transcription elongation factor SPT6-like [Bombus impatiens]

Group
Gene Ontology	GO:0032784	0	regulation of transcription elongation, DNA-dependent
	GO:0006357	0	regulation of transcription from RNA polymerase II promoter
	GO:0003723	1.2e-11	RNA binding
	GO:0005515	2.3e-09	protein binding
KEGG pathway
InterPro domain	[1-1725] IPR017072	0	Transcription elongation factor Spt6
	[1128-1280] IPR023097	7.1e-41	Tex RuvX-like domain
	[1065-1071] IPR023323	1.1e-12	Tex-like domain
	[1371-1424] IPR003029	1.2e-11	Ribosomal protein S1, RNA-binding domain
	[1371-1432] IPR016027	1.8e-11	Nucleic acid-binding, OB-fold-like
	[1370-1428] IPR012340	1.2e-10	Nucleic acid-binding, OB-fold
	[1476-1565] IPR000980	2.3e-09	SH2 motif
Orthology group	MCL10793		Multiple-copy universal gene

Nucleotide sequence:

>DPOGS207841-TA
ATGGCAGATTTTTTGGATTCAGAAGCTGAGAGCGAGGTAGAATCTGAAGAGGATGAGAAACCAACTGAGCGTAAAAAGCCAAAGCGTAAAGCTGCCGTTCAAAGTGATGATGAAGACGAAGAGGAAGAGGATGATGAAGAAAGGCTACGCGAGGAGTTGAAGGATCTTATAGATGATGCACCCATAGAAGAATCTGGAAGTGATGGTGAGGATTCAGATGCCAGTGTTGGCCCAAAGAAAAGAAAAAAAAGTGATGATGAGCTTGATGATAGATTGGAAGACGAAGATTATGACCTCATCGAGGAAAATCTTGGTGTTAAAGTTGCTAGAAATAAATTTAAGAGATTGAGACGTTTGGAGGATGATGACAGTGACAATGAAGGGGCTGATGACCCTGATTTGGAGAGGGAGGTTATAGCTGAGAAACTCTTTGTTGGTGGCTCCGATGAGGAGGATGAAAATCGTTCAGAATCAGCTGCACCGAGGGAAATAGAATATGACGATGAGAATGAAGATATGGAGTCGGATGCTGATGACTTCATTGTTGACGACGACGGGAGACCCATAGCTGAAAGAAAGAAAAAACGCAAACCTATTTTTACTGATGCGTCATTACAAGAGGGTCAGGATATATTTGGTGTAGATTTTGATTATGATGAGTTTGAGAAGTATGGTGAAGAAGACTATGAAGATGAAGATGATGAGGATTTGGATGAATATATTGAGGACGAGGAAGAAGAAGGCGGAGAGAGAAGAAGGACTAAAAAGGGTAAAGCGAAACGTCCAAGTAAAAAGTCAATATTTGAAATATATGAGCCTAGTGAGCTGAAGCGGAGTCACTTCACCGATTTAGATAATGAGATAAGAAAAACTGATGTGCCGGAGCGTATGCAAATCCGTGAGGTGCCTATAACACCAGTCGAAGAAGGCAGTACGGAGTTGGAAGATGAAGCTGAATGGATTTATAAACAGGCGTTCCTTAAAGCGCCCGTGTCCAAAGCTGATTCACAGGAAGCGAGGGAACGAACTCGGCGTACCGGAGGTACAGTGATAAAGATTCGTCAGGCCTTAGATTTTATGAGAAACCAGACATTGGAAGTTCCTTTTATAGCGTTTTATCGTAAGGAGTATGTGCAGCCCGAATTAAGTATTAATGATCTGTGGAAGGTTTATAAGTATGATGCCAAGTGGTGTCAATTGAAACAGCGCAAGGAGAATTTATTGCGCCTTATAGAAAACATGAGGGAGTTTCAGCTTGATAAAGTTATGGCTGATCCGGACGCCCCCATACCCGACACCATGAGACTTATTAAGGATGAAGATATTGATAGACTGAAGAACATACAGACGCCGGAGGAGTTGCGTGATGTCCACACACATTTCCTCCTGTACTATTCACACGACTTACCTGAGATGCAGAAGGTACAAAGAAGTAAGGAGAGGAAGAAGGAGCTAGAAGAGAAAAATACCGGAGGTACAGTGATAAAGATTCGTCAGGCCTTAGATTTTATGAGAAACCAGACATTGGAAGTTCCTTTTATAGCGTTTTATCGTAAGGAGTATGTGCAGCCCGAATTAAGTATTAATGATCTGTGGAAGGTTTATAAGTATGATGCCAAGTGGTGTCAATTGAAACAGCGCAAGGAGAATTTATTGCGTCTTATAGAAAACATGAGGGAGTTTCAGCTTGATAAAGTTATGGCTGATCCGGACGCCCCCATACCCGACACCATGAGACTTATTAAGGATGAAGATATTGATAGACTGAAGAACATACAGACGCCGGAGGAGTTGCGTGATGTCCACACACATTTCCTCCTGTACTATTCACACGACTTACCCGAGATGCAGAAGGTACAAAGAAGTAAGGAGAGGAAGAAGGAGCTAGAAGAGAAAAAGAAGTTAGCACGTGAAGAAGCAGAGAAGAACGGCGAGGATCCAGAAGAGGCGGCGGCTGCTGTGGTCGCCGCTGAACCTGATGATGAAGAGGCCACAGAGGTTAAATATGCTGTCCGCTCTGGACCATACGAACTCTGCAGGAAGGCTGGCATCGAGCCTCTGGTGAAGAAATTCGGTCTCTCCCCGGAGCAGTTCGCTGAGAACGTCCGAGACAACTACCAGCGTCACGAGGTGGAACAACAACCTGTACCGCCGCTAGAGGCCGCCGCCGAATATGTGTCTCCGGGCGGGTCCTGCAGTGAGGTGGTCCGTCGCGCCGTGTATATGTGTGGTGTGCAGTTGGCTCGGGAACCTCTACTACGTGCGACGCTTAGGGATGCTTTGAGAGAGAGGGCCACCGTCACAACCAAACCTACCCCGCGCGGTCTGAAGGAAATCGATGAGGGACATCCCTGCTACAGCATGAAATATTTGAAAAAGAAACCCGTTCGTGACCTCACCGGGGACCAGTTCCTGAGGTTGACGATAGCGGCGGACGACAAGCTGCTAGAGTTGACGATCAGCGAACAGATCGAGGGAAACACGAGCCCCAGCTACCTAGAGGAACTGAAACAGTTGTATCAAAAAGACGAGTTTGCGGCCACAGTTCAGGCGTGGAACGAGCTACGGGCGCAGGCCGTGACACTGGCGCTCACTAAGATCGTTATACCAGAACTGAGACGAGAACTACACGCGGTGCTGTTGCAAGAAGCTAAGGATTATGTGCTCAAGTGTTGTCGACGTCGTCTGTATGATTGGCTCAAGGTGGCTCCTTATGAGTCCAGGGTGTCTGATGAGGACGACGAAGAATGGGACTCTTCAAATGGTCTCCGTGTCATGTCTATCGCTTACGTGCCGGAGCGCACTCAGTGCGCGTTCGCCACGGTGGTCGCGGCGGCCGGGGAGGTGGTCGACCATCTGAGACTGCCGCATCTCCTGCTGAGGAGGAACGCCTGGGACGCCGCGGAGAGACGGAACAAGGAGGCTGACATGACGTCCCTCAGGCGGTTTATCCAGCGTAAGAAGCCCCATGTGATCGTGATCGGCGGCGAGTCTCGTGAGGCGTTGTCGGTGAAGGCGGACGTCGCGGAGTGCGTGGCGCAGCTGGTGGATGATGAACAGTTCCCGAGGATACCAGTCGAGATAGCCGACAACACCATCAGCAAAATATACAGCAATAGTATAAGAGGACGGAACGACTTCAGAGAATATCCGGAAACGTTGAGGCAAGCGATTTGTCAGGCGCGTCTCTTACAAGATCCCCTGATGGAGATATCGCAGCTCTGTGGCCCCGACGAAGAAATACTTTGTCTACGATACCATCCGCTACAAGACCAGTTGCCTAAAGAGGACCTGTTAGAAGGAATCGAGTTGGAGTTCGTTAACAGGATTAATGAAGTCGGCGTAGACGTTAATGAAGCGGTTCTGACCGGGCGAGGGACTGAGTTGCTACAATTCGTTTGTGGTTTAGGGCCGAGGAAGGCGCAGGCTCTCATAAAGTTATTCAAACAAACTAACCAGAAGCTAGAGAACAGGACCCAATTGGTCACGGTCTGTCACATGGGGCCGAAGGTTTTCATCAATTGCTCCGGTTTTATAAGGATCGATACCAGCAGTCTCGGTGACAGCACGGAGGCGTATATAGAAGTATTGGACGGTTCCAGAGTTCATCCGGAAACGTATGAATGGGCGAGAAAAATGGCCGTAGACGCTCTGGAGTACGAGGACGAAGACGCGAACCCAGCCGGAGCCCTGGAGGAGATTCTGGAAGCGCCCGAAAGGTTGAAAGACTTGGATTTAGACGCGTTCGCAGAGGAATTAGAAAGGCAGGGTTTCGGTAATAAGAGCATAACGCTCTACGACATCAGAGCCGAATTGAACTCTAGATACAAAGATCTCAGAGTCGCATATCGATCGCCGACACCCGAGGAATTATTCGATATGTTGACCAAAGAGACCCCGGAAACTCTGTATGTTGGTAAAATGGTGCTGGCAACCGTCATAGGTATCTCGCATAGGAAACCTCAAAGGGAAATGTTAGATCAGGCGAATCCCGTCAGAAATGACGAAACCGGATTGTGGGAATGTCCCTTCTGCCACAAGAACGACTTTCCCGAACTCTCTGAGGTATGGAATCATTTCGACGCAGGCGCGTGTCCGGGTCAAGCGACGGGGGTTAGGGTCAGATTAGACAACGGCCTGTCGGGCTACATACATATAAAGAACCTCTCAGACAGACACGTCACTGACCCCACAGAGAGGGTCAGAATAGGCCAGACCATACATTGTAGGATATTAAAGATTGATGTTGAAAGATTTTCGGTAGATTGTTCCTCTAAATCGTCTGACTTGTTGGATAAGAATAATGAGTGGAGACCACCAAAAGATCCTTACTACGATCAAGAATCTGAGGACAAAGATGTCCGAAAAGACACAGAGACTAAGCAGACTAAAGAGCGAATGCAGTATGTGAAACGAGTTATAGTACATCCAGCATTCCACAATATAAGTTTCGCTGAAGCCGAAAAGCTCATGGAGAACATGGCACAAGGGGAAGTCATAGTTAGGCCTAGCAGTAAGGGATCTGATCACCTGACAGTCACCTGGAAGGTGGCAGACGGTATATGCCAGCACATTGACGTGCGGGAAGAGGGCAAAGAGAATGCCTTTTCTTTAGGTCGTAGTCTTTGGATACAGGGATCAGAGTTTGAAGACTTGGATGAAATTATCGCGAGATACGTTACACCTATGGCGGGTCATGCGAGAGACCTCATTGCTTACAAATACTACAAGAACCTTGGCGGCATGAGAGACAAGGCTGAAGAGATTCTCAAAGACGAGAAGTCGAAGAATCCCAATAAGATTCACTACCCTGACTTCTTGACGCCAGCCATCCCTCGCCATAAACCTCAACCTTCCGTGTACACCGAGCCATCAGACTGGCAGAAGGCGGCGGAGGACTGGGTGCGGCACCGAGCCCGGGACGAGAGTACCTCGACTCCTCGACACGCAACGCGTACACCCCGCCACGACGCTCGCGCCACCCCCCGCCACGACTCTCGCGGCACCCCTCGCCACGACTCACGCGGCACACCGCGGCACGACGCCCGCTCGTCGGTCCACAGCACGCCACACAGCACGCCTCACGCCACGCCACACGGCCACACGTCCTCCGGCCGGTCGTCACGCTCGCACTCCGCACGTTCCACGCCGCACACGAACACGTCGCCGCGCTCTATGTCATTAGGGGACGCGACACCGCTCTACGACGAGAATTAG

Protein sequence:

>DPOGS207841-PA
MADFLDSEAESEVESEEDEKPTERKKPKRKAAVQSDDEDEEEEDDEERLREELKDLIDDAPIEESGSDGEDSDASVGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLEDDDSDNEGADDPDLEREVIAEKLFVGGSDEEDENRSESAAPREIEYDDENEDMESDADDFIVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEDDEDLDEYIEDEEEEGGERRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQIREVPITPVEEGSTELEDEAEWIYKQAFLKAPVSKADSQEARERTRRTGGTVIKIRQALDFMRNQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLRLIENMREFQLDKVMADPDAPIPDTMRLIKDEDIDRLKNIQTPEELRDVHTHFLLYYSHDLPEMQKVQRSKERKKELEEKNTGGTVIKIRQALDFMRNQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLRLIENMREFQLDKVMADPDAPIPDTMRLIKDEDIDRLKNIQTPEELRDVHTHFLLYYSHDLPEMQKVQRSKERKKELEEKKKLAREEAEKNGEDPEEAAAAVVAAEPDDEEATEVKYAVRSGPYELCRKAGIEPLVKKFGLSPEQFAENVRDNYQRHEVEQQPVPPLEAAAEYVSPGGSCSEVVRRAVYMCGVQLAREPLLRATLRDALRERATVTTKPTPRGLKEIDEGHPCYSMKYLKKKPVRDLTGDQFLRLTIAADDKLLELTISEQIEGNTSPSYLEELKQLYQKDEFAATVQAWNELRAQAVTLALTKIVIPELRRELHAVLLQEAKDYVLKCCRRRLYDWLKVAPYESRVSDEDDEEWDSSNGLRVMSIAYVPERTQCAFATVVAAAGEVVDHLRLPHLLLRRNAWDAAERRNKEADMTSLRRFIQRKKPHVIVIGGESREALSVKADVAECVAQLVDDEQFPRIPVEIADNTISKIYSNSIRGRNDFREYPETLRQAICQARLLQDPLMEISQLCGPDEEILCLRYHPLQDQLPKEDLLEGIELEFVNRINEVGVDVNEAVLTGRGTELLQFVCGLGPRKAQALIKLFKQTNQKLENRTQLVTVCHMGPKVFINCSGFIRIDTSSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDEDANPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLRVAYRSPTPEELFDMLTKETPETLYVGKMVLATVIGISHRKPQREMLDQANPVRNDETGLWECPFCHKNDFPELSEVWNHFDAGACPGQATGVRVRLDNGLSGYIHIKNLSDRHVTDPTERVRIGQTIHCRILKIDVERFSVDCSSKSSDLLDKNNEWRPPKDPYYDQESEDKDVRKDTETKQTKERMQYVKRVIVHPAFHNISFAEAEKLMENMAQGEVIVRPSSKGSDHLTVTWKVADGICQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARYVTPMAGHARDLIAYKYYKNLGGMRDKAEEILKDEKSKNPNKIHYPDFLTPAIPRHKPQPSVYTEPSDWQKAAEDWVRHRARDESTSTPRHATRTPRHDARATPRHDSRGTPRHDSRGTPRHDARSSVHSTPHSTPHATPHGHTSSGRSSRSHSARSTPHTNTSPRSMSLGDATPLYDEN-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: