| DPOGS207853 | ||
|---|---|---|
| Transcript | DPOGS207853-TA | 387 bp |
| Protein | DPOGS207853-PA | 128 aa |
| Genomic position | DPSCF300042 + 1388323-1388709 | |
| RNAseq coverage | 258x (Rank: top 41%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL015324 | 3e-53 | 69.29% | |
| Bombyx | BGIBMGA009817-TA | 3e-47 | 69.29% | |
| Drosophila | % | |||
| EBI UniRef50 | UniRef50_Q5TLD1 | 6e-45 | 69.29% | Replication protein A small subunit n=2 Tax=Obtectomera RepID=Q5TLD1_BOMMO |
| NCBI RefSeq | NP_001036940.1 | 9e-46 | 69.29% | replication protein A3 [Bombyx mori] |
| NCBI nr blastp | gi|112983074 | 2e-44 | 69.29% | replication protein A3 [Bombyx mori] |
| NCBI nr blastx | gi|112983074 | 1e-49 | 69.29% | replication protein A3 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | nvi:100113974 | 1e-07 | ||
| K10740 (RPA3) | maps-> | DNA replication | ||
| Homologous recombination | ||||
| Mismatch repair | ||||
| Nucleotide excision repair | ||||
| InterPro domain | [19-127] IPR012340 | 1.9e-27 | Nucleic acid-binding, OB-fold | |
| [20-125] IPR016027 | 2.8e-16 | Nucleic acid-binding, OB-fold-like | ||
| [20-117] IPR013970 | 9e-14 | Replication factor A protein 3 | ||
| Orthology group | MCL22225 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207853-TA
ATGGGTGACCATGAGGAGTTTGAGGATAACCAATATCCTGATAACAACGACTACGTACCGTATGTGACCGCAGCTAACCTAGGACAAAAAGTTGGCGCGAAAGTTTGCCTTTGGGGAAGAGTTACAAAAGTTACTGCCACCGAGACCTTTCATGTTAAAACAGTTGATGATCAAGAAGTGCTTATAAAATTACAGAAGCCCATTAGCGAACCACTGGAAGGATGGTACGAAATTTATGGAACATCTCAAGGAAGGTCTGTTGTTTGTGAAGAGTACGTGCCATTTTCTGAAGATATGACTAAAAACATCGATATCGAAGGTCATAAAAATCTTGCAAAACTTCTATTCGCACTTGATGATCCATGGAATATAGGTGAAAATGAATAA
>DPOGS207853-PA
MGDHEEFEDNQYPDNNDYVPYVTAANLGQKVGAKVCLWGRVTKVTATETFHVKTVDDQEVLIKLQKPISEPLEGWYEIYGTSQGRSVVCEEYVPFSEDMTKNIDIEGHKNLAKLLFALDDPWNIGENE-