DPOGS207853 | ||
---|---|---|
Transcript | DPOGS207853-TA | 387 bp |
Protein | DPOGS207853-PA | 128 aa |
Genomic position | DPSCF300042 + 1388323-1388709 | |
RNAseq coverage | 258x (Rank: top 41%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL015324 | 3e-53 | 69.29% |   |
Bombyx | BGIBMGA009817-TA | 3e-47 | 69.29% |   |
Drosophila | % |   | ||
EBI UniRef50 | UniRef50_Q5TLD1 | 6e-45 | 69.29% | Replication protein A small subunit n=2 Tax=Obtectomera RepID=Q5TLD1_BOMMO |
NCBI RefSeq | NP_001036940.1 | 9e-46 | 69.29% | replication protein A3 [Bombyx mori] |
NCBI nr blastp | gi|112983074 | 2e-44 | 69.29% | replication protein A3 [Bombyx mori] |
NCBI nr blastx | gi|112983074 | 1e-49 | 69.29% | replication protein A3 [Bombyx mori] |
Group | ||||
---|---|---|---|---|
KEGG pathway | nvi:100113974 | 1e-07 |   | |
  | K10740 (RPA3) | maps-> | DNA replication | |
  |   |   | Homologous recombination | |
  |   |   | Mismatch repair | |
  |   |   | Nucleotide excision repair | |
InterPro domain | [19-127] IPR012340 | 1.9e-27 | Nucleic acid-binding, OB-fold | |
[20-125] IPR016027 | 2.8e-16 | Nucleic acid-binding, OB-fold-like | ||
[20-117] IPR013970 | 9e-14 | Replication factor A protein 3 | ||
Orthology group | MCL22225 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS207853-TA
ATGGGTGACCATGAGGAGTTTGAGGATAACCAATATCCTGATAACAACGACTACGTACCGTATGTGACCGCAGCTAACCTAGGACAAAAAGTTGGCGCGAAAGTTTGCCTTTGGGGAAGAGTTACAAAAGTTACTGCCACCGAGACCTTTCATGTTAAAACAGTTGATGATCAAGAAGTGCTTATAAAATTACAGAAGCCCATTAGCGAACCACTGGAAGGATGGTACGAAATTTATGGAACATCTCAAGGAAGGTCTGTTGTTTGTGAAGAGTACGTGCCATTTTCTGAAGATATGACTAAAAACATCGATATCGAAGGTCATAAAAATCTTGCAAAACTTCTATTCGCACTTGATGATCCATGGAATATAGGTGAAAATGAATAA
>DPOGS207853-PA
MGDHEEFEDNQYPDNNDYVPYVTAANLGQKVGAKVCLWGRVTKVTATETFHVKTVDDQEVLIKLQKPISEPLEGWYEIYGTSQGRSVVCEEYVPFSEDMTKNIDIEGHKNLAKLLFALDDPWNIGENE-