| DPOGS207936 | ||
|---|---|---|
| Transcript | DPOGS207936-TA | 540 bp |
| Protein | DPOGS207936-PA | 179 aa |
| Genomic position | DPSCF300090 - 447712-455893 | |
| RNAseq coverage | 237x (Rank: top 43%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL007073 | 2e-51 | 90.43% | |
| Bombyx | BGIBMGA000377-TA | 1e-71 | 84.31% | |
| Drosophila | lin-28-PA | 3e-48 | 68.70% | |
| EBI UniRef50 | UniRef50_Q7Q583 | 2e-54 | 79.53% | AGAP006591-PA n=5 Tax=Arthropoda RepID=Q7Q583_ANOGA |
| NCBI RefSeq | XP_975245.1 | 9e-69 | 74.25% | PREDICTED: similar to AGAP006591-PA [Tribolium castaneum] |
| NCBI nr blastp | gi|270007992 | 4e-68 | 74.40% | hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] |
| NCBI nr blastx | gi|270007992 | 1e-70 | 74.40% | hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003677 | 5e-25 | DNA binding | |
| GO:0006355 | 5e-25 | regulation of transcription, DNA-dependent | ||
| GO:0003676 | 1.2e-20 | nucleic acid binding | ||
| GO:0008270 | 1.2e-07 | zinc ion binding | ||
| KEGG pathway | ||||
| InterPro domain | [27-90] IPR002059 | 5e-25 | Cold-shock protein, DNA-binding | |
| [27-88] IPR012340 | 6.6e-24 | Nucleic acid-binding, OB-fold | ||
| [18-92] IPR016027 | 5.6e-23 | Nucleic acid-binding, OB-fold-like | ||
| [27-91] IPR011129 | 1.2e-20 | Cold shock protein | ||
| [112-151] IPR013084 | 1.2e-07 | Zinc finger, CCHC retroviral-type | ||
| Orthology group | MCL17292 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207936-TA
ATGAGCGGGAGGGAGGGCGGAAATGCAGTTCCGTCTTCGAGTGCGGGCGGCATCGCTGGCGTAACGGGCGTGCCGCGGCGTGGTCGATGCAAGTGGTTCAACGTCGCAAAAGGATGGGGTTTCATCACCCCTGATGATGGAGGCCAGGACGTTTTTGTTCACCAGAGTGTGATTCAAATGACGGGCTTCAGATCGCTGGGTGATGAAGAGGTGGTTGAATTCGAGTGCAAGGAGTCTGACAAGGGTTTGGAAGCTACGCGCGTTTGTGGACCATCCTCAGTCGACTGTCAGGGCTCTCACAGACGTCCGCTGAGTAAGAAGCGGTTTAGGAAGATACGCTGCTACAACTGTGGTGAGTTTGCAAACCACATAGCTGCTAAGTGCAGTATAGGGCCACAACCAAAGAGATGCCACAATTGCAAGAGCGAAGACCACCTCATTGCTGACTGTCCTATAAAGGTCGACAAGAAAAAGGACGACTCACAATCGAAGAACTCAGGCAGTTCCCAGGGGAGTCTGCAAGAGAGCCCGCAGCCGTAA
>DPOGS207936-PA
MSGREGGNAVPSSSAGGIAGVTGVPRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVIQMTGFRSLGDEEVVEFECKESDKGLEATRVCGPSSVDCQGSHRRPLSKKRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLIADCPIKVDKKKDDSQSKNSGSSQGSLQESPQP-