DPOGS208068 | ||
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Transcript | DPOGS208068-TA | 702 bp |
Protein | DPOGS208068-PA | 233 aa |
Genomic position | DPSCF300282 - 79727-81417 | |
RNAseq coverage | 128x (Rank: top 57%) |
Annotation | ||||
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Heliconius | HMEL003347 | 3e-29 | 60.92% |   |
Bombyx | BGIBMGA007741-TA | 1e-33 | 59.80% |   |
Drosophila | Lsm10-PA | 2e-12 | 26.92% |   |
EBI UniRef50 | UniRef50_E9GKQ5 | 8e-19 | 42.15% | Putative uncharacterized protein n=1 Tax=Daphnia pulex RepID=E9GKQ5_DAPPU |
NCBI RefSeq | XP_974885.1 | 2e-18 | 40.54% | PREDICTED: similar to AGAP006140-PA [Tribolium castaneum] |
NCBI nr blastp | gi|321468738 | 3e-18 | 42.15% | hypothetical protein DAPPUDRAFT_304272 [Daphnia pulex] |
NCBI nr blastx | gi|270010565 | 3e-18 | 38.33% | hypothetical protein TcasGA2_TC009983 [Tribolium castaneum] |
Group | ||||
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KEGG pathway |   | |||
InterPro domain | [117-196] IPR010920 | 8.1e-14 | Like-Sm ribonucleoprotein (LSM)-related domain | |
[122-184] IPR001163 | 1.3e-08 | Like-Sm ribonucleoprotein (LSM) domain | ||
[120-185] IPR006649 | 1.6e-06 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[9-91] IPR014807 | 2.6e-06 | Cytochrome oxidase assembly protein 1 | ||
Orthology group | MCL17743 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208068-TA
ATGCAAATCGCGGGTTGGGGTGGTGTTATAGTTGCTTCAACTGGATTTTTCTTACAAAATAGACTTATTGAGAACATAAGAAATACAGAGCATTATAAAGATGCTTTGAAGACCTTAAGATTAAATGTTGGGGCTGTTCACTATCTTGGAGAACCAATAAAGGACAAAAGAATTAAATTAACTGACAGTGAAAATAACAACGCCGATGAGACTAGCGCTAGATTTTGTGTGCCTGTAACTGGTCCAAAAGACAAAGGTCAGCTTTTATTACAGTTAAACAACCACACATTTCAATATTACATCAGGATGTTTGTCGGAACATCAAGAGAGAAATTCTTTTATCACAATACCCTACTATGCCTTGTTAAATCTTTACAAAACCGTAATATAACAGTTGATCTCAGAGATGATTCGTATGTATGTGGTCATCTTGATACGGTGGATGGCTTCATGAACCTTTCACTTAGCAAAGCTGTTTATTGTGATACGCGACAGAATGAATTCCTATTTGAGAACTTTTTCATTCAAAGTAGAAATATTAGATATGTTCACATACCAGAAGATATATCTATCATAGACAATATTAAAAATGAAGTCCATAAGGAAAATATGAAACATACTAACCCAAAACCAAAAAAGTCAAGGAAAGCAACAAAGGCTCTTCAACAGCATATGAAAACGGTTGCAATGTTGGAGAAATGA
>DPOGS208068-PA
MQIAGWGGVIVASTGFFLQNRLIENIRNTEHYKDALKTLRLNVGAVHYLGEPIKDKRIKLTDSENNNADETSARFCVPVTGPKDKGQLLLQLNNHTFQYYIRMFVGTSREKFFYHNTLLCLVKSLQNRNITVDLRDDSYVCGHLDTVDGFMNLSLSKAVYCDTRQNEFLFENFFIQSRNIRYVHIPEDISIIDNIKNEVHKENMKHTNPKPKKSRKATKALQQHMKTVAMLEK-