| DPOGS208070 | ||
|---|---|---|
| Transcript | DPOGS208070-TA | 714 bp |
| Protein | DPOGS208070-PA | 237 aa |
| Genomic position | DPSCF300282 - 66260-69485 | |
| RNAseq coverage | 123x (Rank: top 57%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL006258 | 8e-62 | 48.37% | |
| Bombyx | BGIBMGA007809-TA | 8e-60 | 51.00% | |
| Drosophila | nAcRalpha-30D-PE | 1e-21 | 29.47% | |
| EBI UniRef50 | UniRef50_A8CGN6 | 1e-57 | 51.00% | Nicotinic acetylcholine receptor subunit alpha 9 n=3 Tax=Obtectomera RepID=A8CGN6_BOMMO |
| NCBI RefSeq | NP_001103399.1 | 2e-58 | 51.00% | nicotinic acetylcholine receptor subunit alpha 9 [Bombyx mori] |
| NCBI nr blastp | gi|158186764 | 4e-57 | 51.00% | nicotinic acetylcholine receptor subunit alpha 9 precursor [Bombyx mori] |
| NCBI nr blastx | gi|157783840 | 2e-57 | 48.84% | nicotinic acetylcholine receptor alpha 9 subunit [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016020 | 8e-37 | membrane | |
| GO:0006810 | 8e-37 | transport | ||
| GO:0005230 | 8e-37 | extracellular ligand-gated ion channel activity | ||
| GO:0016021 | 2e-24 | integral to membrane | ||
| GO:0006811 | 2e-24 | ion transport | ||
| KEGG pathway | dre:568566 | 2e-19 | ||
| K04815 (CHRNB4) | maps-> | Neuroactive ligand-receptor interaction | ||
| InterPro domain | [33-213] IPR006202 | 8e-37 | Neurotransmitter-gated ion-channel ligand-binding | |
| [49-216] IPR006201 | 2e-24 | Neurotransmitter-gated ion-channel | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208070-TA
ATGTGTAACGGTGCTCTGTTTGTGTTTTTGTTGACTCTTTTCTTACCAAAGTTTTTGTTGGCAGAATGTCCAGAACATAAAATAGAGATGAACGATGAAGAACGACTTTTCAACGCCCTAAAATGTAAATTCAAGGATGAATACAGACCCGTGAAGGATTACACAATCCCTGTTCGTGTTAAACTAAGATTTGATTTAAAATATATACATTTCGACACTACTAAGGATACGATATCTGTACACAGCTGGGTTGTTTATAATTGGAAGGACGAATTTTTATCTTGGAACGCAAGTGATTACTCGGGTATAAAGGAAATGCAAGTTAAAAGTTATGACATTTGGTCACCTCGGATGATGCTCATGAACCCAGACGCCACTTACTACAATTACGATAAAATTTATACGATTTGTGTATTGGCGTACGATGGTATAGTAACATGTGTACCGAGGACAGTATACAAAGCGACATGTCAGTCGCAACTTACAAACTGGCCATACGACGAACAAAGTTGTACTATATATTTAGGTTCTTGGATGAATAAAGAAGAACAAGTGAATTTGACATTTTATGAAAATGATCCAATAATATTGGATGATTTTCAAACCGCTCCAGGGTGGAAACTTTTAAAAGTGGTCCATTATCGTGTACCGGAGTTAATATTCAATTTGCGGTCTATAGATATACCTGAGTGTGAAGAGGGTACTCACGGCTAG
>DPOGS208070-PA
MCNGALFVFLLTLFLPKFLLAECPEHKIEMNDEERLFNALKCKFKDEYRPVKDYTIPVRVKLRFDLKYIHFDTTKDTISVHSWVVYNWKDEFLSWNASDYSGIKEMQVKSYDIWSPRMMLMNPDATYYNYDKIYTICVLAYDGIVTCVPRTVYKATCQSQLTNWPYDEQSCTIYLGSWMNKEEQVNLTFYENDPIILDDFQTAPGWKLLKVVHYRVPELIFNLRSIDIPECEEGTHG-