DPOGS208502 | ||
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Transcript | DPOGS208502-TA | 390 bp |
Protein | DPOGS208502-PA | 129 aa |
Genomic position | DPSCF300064 - 785352-785846 | |
RNAseq coverage | 15115x (Rank: top 1%) |
Annotation | ||||
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Heliconius | HMEL008746 | 6e-69 | 95.35% |   |
Bombyx | BGIBMGA010604-TA | 7e-72 | 98.45% |   |
Drosophila | RpL40-PA | 6e-69 | 96.88% |   |
EBI UniRef50 | UniRef50_P62987 | 3e-65 | 94.53% | Ubiquitin-60S ribosomal protein L40 n=146 Tax=Eukaryota RepID=RL40_HUMAN |
NCBI RefSeq | NP_001037372.1 | 2e-70 | 98.45% | ubiquitin/ribosomal protein L40 fusion protein [Bombyx mori] |
NCBI nr blastp | gi|15213800 | 9e-70 | 100.00% | ribosomal protein L40 [Spodoptera frugiperda] |
NCBI nr blastx | gi|15213800 | 5e-69 | 100.00% | ribosomal protein L40 [Spodoptera frugiperda] |
Group | ||||
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Gene Ontology | GO:0005515 | 1.4e-35 | protein binding | |
GO:0005840 | 9.7e-30 | ribosome | ||
GO:0006412 | 9.7e-30 | translation | ||
GO:0003735 | 9.7e-30 | structural constituent of ribosome | ||
KEGG pathway | tca:656930 | 2e-67 |   | |
  | K02927 (RP-L40e, RPL40) | maps-> | Ribosome | |
InterPro domain | [11-31] IPR019956 | 7.1e-39 | Ubiquitin subgroup | |
[1-72] IPR000626 | 1.4e-35 | Ubiquitin | ||
[78-128] IPR001975 | 9.7e-30 | Ribosomal protein L40e | ||
Orthology group | MCL11487 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208502-TA
ATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCCTCTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTACAATATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGAGGAGGTACCATTGAGCCTTCCCTTCGTATCTTGGCAATGAAATACAATTGCGACAAAATGATTTGCCGTAAATGCTACGCTCGTCTTCACCCGCGTGCTACCAACTGCCGCAAGACTAAGTGTGGACACACAAACAACCTCCGCCCCAAGAAGAAGCTTAAGGATTAA
>DPOGS208502-PA
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCDKMICRKCYARLHPRATNCRKTKCGHTNNLRPKKKLKD-