DPOGS208546 | ||
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Transcript | DPOGS208546-TA | 684 bp |
Protein | DPOGS208546-PA | 227 aa |
Genomic position | DPSCF300064 + 940871-942733 | |
RNAseq coverage | 932x (Rank: top 14%) |
Annotation | ||||
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Heliconius | HMEL008763 | 9e-133 | 99.56% |   |
Bombyx | BGIBMGA010333-TA | 3e-131 | 98.24% |   |
Drosophila | U2af38-PA | 7e-108 | 96.83% |   |
EBI UniRef50 | UniRef50_Q01081 | 6e-91 | 83.60% | Splicing factor U2AF 35 kDa subunit n=64 Tax=Opisthokonta RepID=U2AF1_HUMAN |
NCBI RefSeq | XP_001606160.1 | 3e-113 | 83.13% | PREDICTED: similar to U2 snrnp auxiliary factor, small subunit [Nasonia vitripennis] |
NCBI nr blastp | gi|156543322 | 6e-112 | 83.13% | PREDICTED: splicing factor U2af 38 kDa subunit-like [Nasonia vitripennis] |
NCBI nr blastx | gi|91089827 | 2e-119 | 92.14% | PREDICTED: similar to AGAP002956-PA [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0005634 | 4.3e-170 | nucleus | |
GO:0003723 | 4.3e-170 | RNA binding | ||
GO:0000166 | 1e-24 | nucleotide binding | ||
GO:0003676 | 6.1e-22 | nucleic acid binding | ||
GO:0008270 | 1.6e-07 | zinc ion binding | ||
KEGG pathway | nvi:100113925 | 9e-113 |   | |
  | K12836 (U2AF1) | maps-> | Shigellosis | |
  |   |   | Spliceosome | |
InterPro domain | [1-227] IPR009145 | 4.3e-170 | U2 auxiliary factor small subunit | |
[43-148] IPR012677 | 1e-24 | Nucleotide-binding, alpha-beta plait | ||
[69-146] IPR003954 | 6.1e-22 | RNA recognition motif domain, eukaryote | ||
[15-38] IPR000571 | 1.6e-07 | Zinc finger, CCCH-type | ||
[95-143] IPR000504 | 1.4e-06 | RNA recognition motif domain | ||
Orthology group | MCL15143 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208546-TA
ATGGCCGAATATTTAGCGGCTATATTTGGTACTGAAAAGGATAAGGTAAATTGCTCATTCTATTTTAAAATAGGAGCTTGTCGACATGGTGATCGATGTTCGAGAATTCATAACAAACCAACTTTTTCGCAAACTGTGTTGCTACAAAATTTATATGTAAATCCACAAAACTCAGCCAAGTCTGCTGATGGCAGTCATTTGGTTGTGGCAAATGTATCGGACGAGGAGATGCAAGAGCACTATGATAACTTTTTTGAAGATGTTTTTGTTGAATGTGAAGATAAATATGGTGAAATTGAGGAAATGAATGTATGTGACAACCTCGGAGATCACTTAGTAGGCAATGTTTATATTAAGTTTCGCCGAGAGGAAGATGCCGAGAAGGCTGTAAATGACCTCAATAACCGCTGGTTTGGAGGCCGGCCTGTTTATGCTGAGTTGTCTCCTGTAACTGACTTCCGTGAAGCTTGCTGTCGTCAGTATGAAATGGGGGAATGTACCAGGAGTGGCTTTTGTAATTTCATGCACTTGAAACCAATTTCAAGAGAACTGAGGAGATACCTGTACGCTCGTCGTAAGGGCGGCCGCCGGTCCAGGTCCAGGTCTCGTGAGCGTCGCCGGCGATCGAGATCGCGCGACCGTCGCCGCGAGCCGCCTCGCAACTCGCGCTCTGGACGGTACTGA
>DPOGS208546-PA
MAEYLAAIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYARRKGGRRSRSRSRERRRRSRSRDRRREPPRNSRSGRY-