DPOGS208785 | ||
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Transcript | DPOGS208785-TA | 432 bp |
Protein | DPOGS208785-PA | 143 aa |
Genomic position | DPSCF300036 - 743251-744689 | |
RNAseq coverage | 27037x (Rank: top 0%) |
Annotation | ||||
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Heliconius | HMEL004185 | 3e-79 | 99.30% |   |
Bombyx | BGIBMGA007645-TA | 9e-78 | 99.29% |   |
Drosophila | RpS23-PA | 3e-76 | 94.41% |   |
EBI UniRef50 | UniRef50_G7YSN8 | 4e-68 | 85.11% | Small subunit ribosomal protein S23e n=2 Tax=Clonorchis sinensis RepID=G7YSN8_CLOSI |
NCBI RefSeq | NP_001037273.1 | 7e-78 | 99.30% | ribosomal protein S23 [Bombyx mori] |
NCBI nr blastp | gi|56462240 | 9e-77 | 100.00% | ribosomal protein 5 [Lonomia obliqua] |
NCBI nr blastx | gi|56462240 | 6e-78 | 100.00% | ribosomal protein 5 [Lonomia obliqua] |
Group | ||||
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Gene Ontology | GO:0005840 | 2.2e-95 | ribosome | |
GO:0006412 | 2.2e-95 | translation | ||
GO:0005622 | 2.2e-95 | intracellular | ||
GO:0003735 | 2.2e-95 | structural constituent of ribosome | ||
GO:0015935 | 4.7e-54 | small ribosomal subunit | ||
KEGG pathway | tca:662141 | 2e-76 |   | |
  | K02973 (RP-S23e, RPS23) | maps-> | Ribosome | |
InterPro domain | [1-143] IPR006032 | 2.2e-95 | Ribosomal protein S12/S23 | |
[7-142] IPR005680 | 4.7e-54 | Ribosomal protein S23, eukaryotic/archaeal | ||
[16-139] IPR012340 | 4.3e-37 | Nucleic acid-binding, OB-fold | ||
[19-141] IPR016027 | 9.5e-37 | Nucleic acid-binding, OB-fold-like | ||
Orthology group | MCL12245 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208785-TA
ATGGGTAAACCCCGAGGAATACGTACCGCGCGTAAGCACGTGAACCATCGCAGAGAGCAGCGATGGGCAGACAAGGAGTTCAAAAAAGCCCACATGGGCACAAGGTGGAAGGCTAATCCCTTCGGTGGAGCATCTCACGCTAAGGGCATTGTCTTGGAGAAAGTTGGTGTTGAAGCCAAACAACCTAACTCCGCTATCCGTAAGTGCGTCAGAGTGCAACTTATCAAGAACGGCAAGAAGGTGACAGCGTTCGTGCCTCGTGACGGTTGTTTGAATCACATCGAGGAGAACGACGAAGTGCTGGTCGCGGGATTCGGTCGTAAGGGTCACGCCGTCGGTGACATTCCCGGAGTCAGGTTCAAGGTGGTCAAGGTAGCCAACGTATCACTCCTAGCATTGTACAAAGAAAAGAAGGAAAGACCAAGATCGTAG
>DPOGS208785-PA
MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS-