| DPOGS208833 | ||
|---|---|---|
| Transcript | DPOGS208833-TA | 306 bp |
| Protein | DPOGS208833-PA | 101 aa |
| Genomic position | DPSCF300036 + 745586-745891 | |
| RNAseq coverage | 863x (Rank: top 15%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL004184 | 9e-56 | 98.02% | |
| Bombyx | BGIBMGA007940-TA | 4e-56 | 98.02% | |
| Drosophila | RpII15-PA | 2e-48 | 83.50% | |
| EBI UniRef50 | UniRef50_P36954 | 9e-37 | 69.90% | DNA-directed RNA polymerase II subunit RPB9 n=90 Tax=Eukaryota RepID=RPB9_HUMAN |
| NCBI RefSeq | XP_002058436.1 | 3e-47 | 83.50% | GJ14413 [Drosophila virilis] |
| NCBI nr blastp | gi|195399658 | 8e-46 | 83.50% | GJ14413 [Drosophila virilis] |
| NCBI nr blastx | gi|195399658 | 3e-48 | 83.50% | GJ14413 [Drosophila virilis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0008270 | 2.5e-20 | zinc ion binding | |
| GO:0006351 | 2.5e-20 | transcription, DNA-dependent | ||
| GO:0003676 | 2.5e-20 | nucleic acid binding | ||
| GO:0003899 | 6.3e-09 | DNA-directed RNA polymerase activity | ||
| GO:0003677 | 6.3e-09 | DNA binding | ||
| KEGG pathway | dvi:Dvir_GJ14413 | 1e-46 | ||
| K03017 (RPB9) | maps-> | Huntington's disease | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [62-101] IPR001222 | 2.5e-20 | Zinc finger, TFIIS-type | |
| [1-46] IPR001529 | 6.3e-09 | DNA-directed RNA polymerase, M/15kDa subunit | ||
| Orthology group | MCL13082 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS208833-TA
ATGCTTTACCCACGAGAAGATAAAAACAACAAAGTCCTGCAGTACGCTTGTCGAAATTGCGATTATAAACAACTGGCAGACTCAAATTGTGTGTATGTCAACAAAATTATGCACGAAGTAGATGAACTAACACATATAAATCCCGATGTAGTAAGCGATCCGACATTACCCCGCACAAAAGATCATGTCTGCCCGAAATGTAATCACAGGGAAGCTGTATTCTTCCAAGGACAAACGAGACGTGCAGAAGAAGAAATGAGGCTGTATTATGTGTGCACCAGCTGCAAACACAGGTGGACGGAGTGA
>DPOGS208833-PA
MLYPREDKNNKVLQYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTKDHVCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE-