Monarch geneset OGS2.0

DPOGS208884
TranscriptDPOGS208884-TA1497 bp
ProteinDPOGS208884-PA498 aa
Genomic positionDPSCF300009 - 1143860-1176752
RNAseq coverage40x (Rank: top 73%)
Annotation
HeliconiusHMEL0165363e-14852.64% 
BombyxBGIBMGA002556-TA1e-15258.53% 
DrosophilanAcRalpha-80B-PC0.070.37% 
EBI UniRef50UniRef50_P917660.065.44%Acetylcholine receptor subunit alpha-like n=46 Tax=Bilateria RepID=ACH1_MANSE
NCBI RefSeqNP_001091691.10.070.92%nicotinic acetylcholine receptor alpha4 subunit [Apis mellifera]
NCBI nr blastpgi|3838474850.071.10%PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Megachile rotundata]
NCBI nr blastxgi|1700516520.071.79%acetylcholine receptor protein alpha 1 [Culex quinquefasciatus]
Group
Gene OntologyGO:00160214.6e-268integral to membrane
GO:00068114.6e-268ion transport
GO:00160201e-84membrane
GO:00068101e-84transport
GO:00052301e-84extracellular ligand-gated ion channel activity
GO:00048894.4e-24nicotinic acetylcholine-activated cation-selective channel activity
GO:00052164.4e-24ion channel activity
GO:00452114.4e-24postsynaptic membrane
KEGG pathway 
InterPro domain[1-481] IPR0062014.6e-268Neurotransmitter-gated ion-channel
[25-238] IPR0062021e-84Neurotransmitter-gated ion-channel ligand-binding
[239-477] IPR0060295.2e-49Neurotransmitter-gated ion-channel transmembrane domain
[58-74] IPR0023944.4e-24Nicotinic acetylcholine receptor
Orthology groupMCL10360 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS208884-TA
ATGGGCGCTCTCGTCTGGTGGCTGGCGGCCTGCTGCCTCGTTCGCGCCGTCGCCGCCGGCAATCCTGACGCCAAGCGCCTCTACGACGACCTCTTATCCAACTACAACAAACTAGTGCGTCCTGTTGTCAACAACACGGACGTCCTTCGCGTCTGCATCAAGCTGAAGCTGAGCCAGCTCATCGATGTCAACTTGAAGAATCAAATTATGACAACGAACCTATGGGTGGAGCAGTCGTGGTATGACTACAAGCTTCGCTGGGAGCCTCGCGAGTACGGCGGAGTGCACATGCTGCATGTGCCCTCCGATCATATATGGAGACCAGACATCGTGCTTTACAACAATGCCGACGGTAACTTCGAGGTAACGTTGGCGACCAAGGCGACCATCTATCACCAAGGGCTGGTCGAATGGAAACCACCCGCTATTTACAAGTCCTCCTGCGAAATAGACGTGGAATATTTTCCTTTCGACGAGCAAACATGCGTTCTTAAGTTCGGTAGCTGGACGTACGACGGATTCAAGGTGGACTTGAGGCATATGGATGAGCAAGCTGGGAGTAATGTGGTGTCCATGGGAGTTGATCTATCAGAGTTCTATATGTCCGTGGAATGGGACATTTTAGAAGTACCAGCTGTTAGGAACGAGAAGTTTTACACGTGTTGCGACGAGCCCTACTTGGATATAACGTTCAACATTACACTAAGACGCAAGACGCTGTTCTACACCGTCAATATTATCATACCTTGTATGGGTATATCGTTCCTTACCATACTTACCTTTTACTTGCCTTCTGACAGCGGCGAAAAGGTATTTATACTAAAACTTTACAATATTTATATAGCCTATTACGAAATTATATCGTGTATCAACAAAAATATAAGGGGTGTATTTTTTACGCCCAAACCATTGCCAACTCCGGAGTACTTAAATTCAACTTCCATATGTGTGACGGTGGTGGTATTGAACGTACACTTCCGCTCGCCCCAGACACACAGAATGGCGCCGTGGGTCAAACGAGTCTTCATACATATCCTGCCCAGACTGTTGTTCATGAAACGACCTCAGTACAAATTCGATACAACAAGGTTAAGTGAAAGTAACCGGTTTGGTGGCAGCTGCGTTGTCCACGGTTCTAGCGAGGGCGGAGCACTACCAGTTCCCGAGGAGGAGGCTCTTAGTCCTGTACCGGAGCCCCCGCCTGGCTTCAGTCACTCCTCCTGTCCCCCTGAAGTACATAGAACGTGTTTCTGCGTGAGATTCATAGCAGAACATACTAGGATGTTGGAAGACTCAACTAAGGTCAAAGAAGATTGGAAATACGTTGCGATGGTGCTCGATCGTTTATTCTTATGGATATTTACCTTGGCGGTTTTAGTTGGGACCGCCGGCATTATCCTTCAAGCGCCCACGTTATATGACGACAGAGTGCCCATTGATAAACATTTCAATCAAATAGCAACGTCCTCGCTAGTCAGGTGTCCGCCACCGTCGTAA

Protein sequence:

>DPOGS208884-PA
MGALVWWLAACCLVRAVAAGNPDAKRLYDDLLSNYNKLVRPVVNNTDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPREYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQAGSNVVSMGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITLRRKTLFYTVNIIIPCMGISFLTILTFYLPSDSGEKVFILKLYNIYIAYYEIISCINKNIRGVFFTPKPLPTPEYLNSTSICVTVVVLNVHFRSPQTHRMAPWVKRVFIHILPRLLFMKRPQYKFDTTRLSESNRFGGSCVVHGSSEGGALPVPEEEALSPVPEPPPGFSHSSCPPEVHRTCFCVRFIAEHTRMLEDSTKVKEDWKYVAMVLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKHFNQIATSSLVRCPPPS-