DPOGS208943 | ||
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Transcript | DPOGS208943-TA | 726 bp |
Protein | DPOGS208943-PA | 241 aa |
Genomic position | DPSCF300009 + 301245-303654 | |
RNAseq coverage | 44x (Rank: top 72%) |
Annotation | ||||
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Heliconius | HMEL016068 | 6e-76 | 59.58% |   |
Bombyx | BGIBMGA002414-TA | 2e-89 | 64.71% |   |
Drosophila | CG6980-PA | 6e-24 | 31.19% |   |
EBI UniRef50 | UniRef50_F4W4J1 | 1e-33 | 39.72% | Tetratricopeptide repeat protein 12 n=7 Tax=Formicidae RepID=F4W4J1_ACREC |
NCBI RefSeq | XP_001122862.1 | 2e-34 | 42.05% | PREDICTED: similar to tetratricopeptide repeat domain 12 [Apis mellifera] |
NCBI nr blastp | gi|332376444 | 4e-39 | 44.65% | unknown [Dendroctonus ponderosae] |
NCBI nr blastx | gi|332376444 | 1e-40 | 46.05% | unknown [Dendroctonus ponderosae] |
Group | ||||
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Gene Ontology | GO:0005488 | 3.5e-20 | binding | |
KEGG pathway | dre:324243 | 2e-09 |   | |
  | K09561 (STUB1, CHIP) | maps-> | Ubiquitin mediated proteolysis | |
  |   |   | Protein processing in endoplasmic reticulum | |
InterPro domain | [121-227] IPR011990 | 3.5e-20 | Tetratricopeptide-like helical | |
Orthology group | MCL10818 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS208943-TA
ATGAGCAACAGAGCATTATCCAATCCTGCTTTAAAGGATCATAAAACTGTGGAACTTAACGAGGAATGGAATAACTTTATGAAGAGAATAGGAGAGGTATCAAATCTGGTCAAAGATATGGCTAGCGGTGATAAGGAGAGAGCGGAGGCAGCTAAGATTGTAGCGGACAAATTCCTAGAGGGCAAAATGATTTTAGAGGATGATATCAAAATGGTCGTCAAAGAAGATAGGACTGTTATTAACGAAAATGCTTTCAAAACAATGGGAAATAAAGATACAGGTGAAGTTGACAAAGACGCTTGGATGGCAGAGGTCAGTAAGGATGCCGAGAAAAGAGCACTGGATAGAAAGATACGTCTGGAAAAAGCTGATACTCTCAAAACTCAGGCCGTAAAAGCGTTTAGAAGAGAGGACTATGATAGAGCTCTGTCCTGCTACAACAAGGCTATAGAACAGGTTAAAGATAACGCCCTGCTGTACTGTGATCGTGCTTTGACCAAAATCAAACTTGGGAACTATCAAAAGGTGTTCAGCGACTGCGAGTGGGCGCTGCGTATCAATGAAAACAGCTTTAAAGCGAGACTGTACAGAGCTAAAGCTCACAAAGAGCTGGAAAATAGTGACGAGTATGAAGAATGCAGGAGGGAATTGGAGGAAAAATTCCCACAACACGACGAGCTTATTAAATACTTCCTAGATGCGAAAGACGGCTATGACGACGCCTAA
>DPOGS208943-PA
MSNRALSNPALKDHKTVELNEEWNNFMKRIGEVSNLVKDMASGDKERAEAAKIVADKFLEGKMILEDDIKMVVKEDRTVINENAFKTMGNKDTGEVDKDAWMAEVSKDAEKRALDRKIRLEKADTLKTQAVKAFRREDYDRALSCYNKAIEQVKDNALLYCDRALTKIKLGNYQKVFSDCEWALRINENSFKARLYRAKAHKELENSDEYEECRRELEEKFPQHDELIKYFLDAKDGYDDA-