DPOGS209150 | ||
---|---|---|
Transcript | DPOGS209150-TA | 534 bp |
Protein | DPOGS209150-PA | 177 aa |
Genomic position | DPSCF300061 - 571564-573535 | |
RNAseq coverage | 29540x (Rank: top 0%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL010028 | 5e-62 | 88.52% |   |
Bombyx | BGIBMGA011467-TA | 2e-97 | 94.35% |   |
Drosophila | RpL18A-PA | 2e-76 | 75.00% |   |
EBI UniRef50 | UniRef50_P41093 | 2e-74 | 75.00% | 60S ribosomal protein L18a n=57 Tax=Bilateria RepID=RL18A_DROME |
NCBI RefSeq | NP_001037219.1 | 2e-95 | 93.79% | ribosomal protein L18A [Bombyx mori] |
NCBI nr blastp | gi|342356467 | 2e-95 | 95.48% | ribosomal protein L18A [Heliconius melpomene cythera] |
NCBI nr blastx | gi|342356467 | 2e-95 | 95.48% | ribosomal protein L18A [Heliconius melpomene cythera] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005840 | 8e-103 | ribosome | |
GO:0006412 | 8e-103 | translation | ||
GO:0003735 | 8e-103 | structural constituent of ribosome | ||
KEGG pathway | ame:409832 | 1e-81 |   | |
  | K02882 (RP-L18Ae, RPL18A) | maps-> | Ribosome | |
InterPro domain | [2-176] IPR021138 | 8e-103 | Ribosomal protein L18a | |
[7-130] IPR023573 | 2.9e-54 | Ribosomal protein L18a/LX | ||
Orthology group | MCL12205 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS209150-TA
ATGAAGGCGAAAGGAGAGTTGAAGGAATATGAAGTCATTGGGCGCAAGCTGCCCTCGGAGAGCGATCCCAAGCCTCCTCTATATAAAATGAGAATCTTCTCTCCAGACCCCATAGTGGCTAAGTCACGGTTTTGGTACTTTTTAAGACAATTGAAGAAGTTTAAGAAGACTACCGGCGAAATTGTATCGATCAGGGAAATCCCGGAGAGGAGTCCAATCAAGATAAAGAACTTTGGCATTTGGTTGCGCTATGAGTCTCGCTCGGGTGTCCACAACATGTACCGCGAGTATCGTGCTCTCAGTGTGGGAGACGGCGTCACACAGTGCTACAGGGACATGGGCGCTAGACACAGGGCGCGCGCTCATTCCATACAGATAATCAAAGTGGAGGTGATCAAGGCCGCTGCCTGCCGCCGTCCCCAGGTGAAACAGTTCCACAACAGCAGCATCCGTTTCCCGCTGCCCAAGCGCGTGCATCACTACAAGAGACTCAACACCTTCGCATACAAGCGACCCAGCACATACTTCTTGTAA
>DPOGS209150-PA
MKAKGELKEYEVIGRKLPSESDPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPERSPIKIKNFGIWLRYESRSGVHNMYREYRALSVGDGVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSSIRFPLPKRVHHYKRLNTFAYKRPSTYFL-