| DPOGS209180 | ||
|---|---|---|
| Transcript | DPOGS209180-TA | 645 bp |
| Protein | DPOGS209180-PA | 214 aa |
| Genomic position | DPSCF300061 + 174434-175689 | |
| RNAseq coverage | 610x (Rank: top 21%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL009752 | 1e-115 | 94.26% | |
| Bombyx | BGIBMGA006641-TA | 5e-116 | 91.59% | |
| Drosophila | Rab4-PC | 2e-98 | 79.44% | |
| EBI UniRef50 | UniRef50_Q68EK7 | 1e-89 | 72.30% | Ras-related protein Rab-4B n=29 Tax=root RepID=RAB4B_DANRE |
| NCBI RefSeq | NP_001040209.1 | 2e-114 | 91.59% | ras-related GTP-binding protein 4b [Bombyx mori] |
| NCBI nr blastp | gi|114052070 | 3e-113 | 91.59% | ras-related GTP-binding protein 4b [Bombyx mori] |
| NCBI nr blastx | gi|114052070 | 1e-109 | 91.59% | ras-related GTP-binding protein 4b [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0007264 | 1.3e-95 | small GTPase mediated signal transduction | |
| GO:0005525 | 1.3e-95 | GTP binding | ||
| GO:0015031 | 1.3e-95 | protein transport | ||
| GO:0016020 | 2.5e-22 | membrane | ||
| GO:0007165 | 2.5e-22 | signal transduction | ||
| GO:0006184 | 2.5e-22 | GTP catabolic process | ||
| GO:0003924 | 2.5e-22 | GTPase activity | ||
| GO:0006886 | 1.4e-10 | intracellular protein transport | ||
| GO:0006913 | 1.4e-10 | nucleocytoplasmic transport | ||
| GO:0005622 | 5e-10 | intracellular | ||
| KEGG pathway | ||||
| InterPro domain | [9-172] IPR003579 | 1.3e-95 | Small GTPase superfamily, Rab type | |
| [10-170] IPR001806 | 8.8e-58 | Small GTPase superfamily | ||
| [8-162] IPR005225 | 1.4e-32 | Small GTP-binding protein domain | ||
| [6-172] IPR020849 | 2.5e-22 | Small GTPase superfamily, Ras type | ||
| [14-212] IPR002041 | 1.4e-10 | Ran GTPase | ||
| [11-172] IPR003578 | 5e-10 | Small GTPase superfamily, Rho type | ||
| Orthology group | MCL16954 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS209180-TA
ATGTCTGAATCGTATGAATATTTATTTAAGTTTCTTATAATAGGAAGTGCTGGTACTGGAAAATCGAGTCTTTTAAATAACTTTCTAGGGAATAAATTCAAAGAAGACAGATGCCATACTATAGGGGTAGAATTTGGGTCGAAAATAATAAATATTGGAGGCAAATCTACTAAACTGCAAATTTGGGACACAGCTGGCCAAGAGAGGTTTCGTTCAGTGACTCGTTCATATTATAGAGGAGCTGCGGGTGCCCTTTTAGTATATGATGTTACATCTCGAGACTCATTCAATGCTCTAAGTAATTGGTTGCGAGATGCTCGCACACTCGCCAGCCCTAACATTGTCATACTACTTGTTGGTAACAAAAAAGATCTGGAAGGCTCTAGAGAAGTCACCTTTACTGAAGCTAGTCAATTTGCACAGGAAAATGAATTAATGTTCCTTGAAACGAGCGCCAGGACCGGAGAAAATGTTGAGGAGGCATTCTTAAAGTGCTCCAAAACCATACTTGCTAAGATCGAAACCGGGGAATTGGATCCTGAGAGGATAGGTTCGGGGATACAGTATGGGACGGGCACATCAAAGAAATTGGCGGCTCCAAAAAAACCTGTGAAGCCTCCATCAGATTGCGCCTGTAACGTTTAA
>DPOGS209180-PA
MSESYEYLFKFLIIGSAGTGKSSLLNNFLGNKFKEDRCHTIGVEFGSKIINIGGKSTKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDVTSRDSFNALSNWLRDARTLASPNIVILLVGNKKDLEGSREVTFTEASQFAQENELMFLETSARTGENVEEAFLKCSKTILAKIETGELDPERIGSGIQYGTGTSKKLAAPKKPVKPPSDCACNV-