DPOGS209222 | ||
---|---|---|
Transcript | DPOGS209222-TA | 597 bp |
Protein | DPOGS209222-PA | 198 aa |
Genomic position | DPSCF300204 - 157220-158705 | |
RNAseq coverage | 84x (Rank: top 64%) |
Annotation | ||||
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Heliconius | HMEL022283 | 1e-58 | 64.20% |   |
Bombyx | % |   | ||
Drosophila | CG17283-PA | 6e-06 | 27.56% |   |
EBI UniRef50 | UniRef50_P56817 | 2e-24 | 37.20% | Beta-secretase 1 n=132 Tax=Chordata RepID=BACE1_HUMAN |
NCBI RefSeq | XP_790544.2 | 1e-21 | 37.28% | PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] |
NCBI nr blastp | gi|363742611 | 2e-24 | 39.51% | PREDICTED: beta-secretase 1 [Gallus gallus] |
NCBI nr blastx | gi|149041535 | 4e-24 | 38.04% | beta-site APP cleaving enzyme 1, isoform CRA_b [Rattus norvegicus] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0006508 | 5.9e-26 | proteolysis | |
GO:0004190 | 5.9e-26 | aspartic-type endopeptidase activity | ||
KEGG pathway | rno:29392 | 4e-25 |   | |
  | K04521 (BACE1) | maps-> | Alzheimer's disease | |
InterPro domain | [24-143] IPR001461 | 5.9e-26 | Peptidase A1 | |
[33-148] IPR009007 | 7.1e-20 | Peptidase aspartic, catalytic | ||
[19-143] IPR021109 | 9.3e-17 | Peptidase aspartic | ||
Orthology group | MCL19949 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS209222-TA
ATGCAAAAAACAAGTTTAAGTTATTTTTTTGTACTCCTCATCGTGTCCGTGACTTCATGTGAAGAATATAACTTGTACGGAGATGCTGGACAAGCTTATGCGTTTGAAATTGATATCGGACATCCGAAACAAAAGCTTAATGTAATAATTGATACAGGAAGCACAACTTTGGCTATTGCAGCATATCCAAGAAAAGATAATAATAAATATTTTTATCCTGGTAACTCAACAACAATATACAATAGTATCACAAAGATCGAGTCAAAATATTATCAGGGGACATGGGTTGGCCATTTAGTATCTGATTTTGTAACCTTCCCTTCACTACCGTTGATACCAGAAGTTAGGTGTGATATCGCATTAATAAGTAAGAGTCACAAATTCTTTATGAATGGCTCGGGATGGCAGGGATTACTAGGGCTTGCATATTTATCAGTAGGAGCCCGAAGTGATGGTGTCATTGTTGGTTCCTGGTTGGATTCTGTTGAGAGATCCTTGAATAGGCCTATGTCTTTTCAGTTCAAGTTATGTGGGGTTGAGAGTCCTAACAATGCAACACATTATGGAAAGTTTGAAATGATAGGTAATATCTCTTAG
>DPOGS209222-PA
MQKTSLSYFFVLLIVSVTSCEEYNLYGDAGQAYAFEIDIGHPKQKLNVIIDTGSTTLAIAAYPRKDNNKYFYPGNSTTIYNSITKIESKYYQGTWVGHLVSDFVTFPSLPLIPEVRCDIALISKSHKFFMNGSGWQGLLGLAYLSVGARSDGVIVGSWLDSVERSLNRPMSFQFKLCGVESPNNATHYGKFEMIGNIS-