Monarch geneset OGS2.0

DPOGS209764
TranscriptDPOGS209764-TA1407 bp
ProteinDPOGS209764-PA468 aa
Genomic positionDPSCF300314 + 90412-93139
RNAseq coverage28x (Rank: top 76%)
Annotation
HeliconiusHMEL0119110.078.43% 
BombyxBGIBMGA005403-TA1e-14981.85% 
DrosophilaMdh2-PA1e-5941.48% 
EBI UniRef50UniRef50_E0VBN93e-6144.48%Malate dehydrogenase, putative n=1 Tax=Pediculus humanus corporis RepID=E0VBN9_PEDHC
NCBI RefSeqXP_002423533.15e-6244.48%malate dehydrogenase, putative [Pediculus humanus corporis]
NCBI nr blastpgi|2420053519e-6144.48%malate dehydrogenase, putative [Pediculus humanus corporis]
NCBI nr blastxgi|2420053512e-6544.84%malate dehydrogenase, putative [Pediculus humanus corporis]
Group
Gene OntologyGO:00551141.2e-65oxidation-reduction process
GO:00061081.2e-65malate metabolic process
GO:00300601.2e-65L-malate dehydrogenase activity
GO:00166163.3e-31oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:00038243.3e-31catalytic activity
GO:00059753.3e-31carbohydrate metabolic process
GO:00054886.9e-27binding
GO:00164918.6e-20oxidoreductase activity
KEGG pathwayder:Dere_GG227597e-58 
 K00026 (MDH2)maps-> Citrate cycle (TCA cycle)
    Pyruvate metabolism
    Carbon fixation in photosynthetic organisms
    Glyoxylate and dicarboxylate metabolism
InterPro domain[50-362] IPR0100971.2e-65Malate dehydrogenase, type 1
[190-352] IPR0159553.3e-31Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
[50-186] IPR0160406.9e-27NAD(P)-binding domain
[50-180] IPR0012368.6e-20Lactate/malate dehydrogenase, N-terminal
[190-352] IPR0223832.6e-15Lactate/malate dehydrogenase, C-terminal
Orthology groupMCL25133 Lepidoptera specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS209764-TA
ATGGTTTCTAAATTTCTGTGTACGTTTGGTCGAATGTCTTCTCAATTGTATATAAATCACATAATTTCTCAAAAATTTCCAAAAGTACCTGGTTTGCAGTTATTAAACGTACACATAAAAAGAAAATACAGTACTTGCCCTTCTGGAATGAAAGTTACGATATGTGGAGCTGGAGGTTGCACAGGTCAGCCACTCGCTCTTCTTCTAAAACAATGTCCATTATTGGATGAGATAGCACTTTATGATATTTGTGCAACTTGTGGCTACGGCATGGAGTTGAGTCACGTTGATACAAAATGTAAGGTCTCTTCTTTCTCTGGCAGACATATGCTTTGCGATGCTCTCAAGGGCTCAAGAGTTGTTGTAATAGTCGCTCGAAACGAATGCGATTCATTTGAAAATAGTGCCCCAATTGTCACAGAGATTGCATTACAAATTTGTAACACATGTCCCCAGGCATTTACAATCGTAGCCACGGAACCAGTGGAGAGTATGGTTCCGTTAGTCAGCGAGATACAAAGACTACGTTCGCAATACAATCCAAGATTTCTACTTGGATGTGTAGAGCTGAACTGTGTGCGAGCTAATACGGTCTTGGCAGATTTTCTTAGAGTACCGCCAGAGTCAGTTAGAGTTCCGGTGGTAGGAGGCGCTACTCCAGAGACCATGGTTCCCGTACTCTCCGCAGCTGTACATCCTTGCACACTGTCGCAGGAACAGACGGAATGTGCTACCTCATGTATAATGAGCGGCAACGAAGCTGTATGTGCTGCTAAAGGTTGCGCGACAGCAACTGCATGTCTTTCGGGAGCCTTTGCTGTGGCTCGTACTACGATCAATGTGGTGAAAGGTTTACAGGGTAGGAAGAACGTTGTGCAGTGTGCTTATGTAGACAGTCTCGGAACATGTGCTCCGGGATGTCAGTTTTTTGCTAGTGAGGTTATCCTCGGACCAGCTGGTGTAGAAAAGAATTTAGGTATACCAGAGCTTTCTAAATTTGAAAACTGTCTCTTATGCCACTGTCTACCGTATGTCCGTAATGAAATCGCTCGTGCAATTTGGCTCGTGTACACGATGTGCCAGCAGTGCTGCTGTTATGGATGCACTGTTCATCCCAGCACATGCTACACTCCGCCCATAGTTCCCTGCGTACCACCAACCAACTGGACCTGTGACTGTCCCGACGCTTGCCGAGATGAATACCTCGCCTCCATCTGTCGTGAGATGACCTGCATGTGCGGTAGTACAGCGCTGTGCTGGAGGCCGCGGGAAGCCGACTATGATGCCAAACGAGCCTCGAACCTTACACATCAAATGCCGTTGAGGAGCGCCGCCTGTAGTGTTTGTAACGTGCCACGAAGCGTGCGAATTCAACAGGCCTTACGAGAAAAGAAGGGAGATTTTTAA

Protein sequence:

>DPOGS209764-PA
MVSKFLCTFGRMSSQLYINHIISQKFPKVPGLQLLNVHIKRKYSTCPSGMKVTICGAGGCTGQPLALLLKQCPLLDEIALYDICATCGYGMELSHVDTKCKVSSFSGRHMLCDALKGSRVVVIVARNECDSFENSAPIVTEIALQICNTCPQAFTIVATEPVESMVPLVSEIQRLRSQYNPRFLLGCVELNCVRANTVLADFLRVPPESVRVPVVGGATPETMVPVLSAAVHPCTLSQEQTECATSCIMSGNEAVCAAKGCATATACLSGAFAVARTTINVVKGLQGRKNVVQCAYVDSLGTCAPGCQFFASEVILGPAGVEKNLGIPELSKFENCLLCHCLPYVRNEIARAIWLVYTMCQQCCCYGCTVHPSTCYTPPIVPCVPPTNWTCDCPDACRDEYLASICREMTCMCGSTALCWRPREADYDAKRASNLTHQMPLRSAACSVCNVPRSVRIQQALREKKGDF-