DPOGS210110 | ||
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Transcript | DPOGS210110-TA | 585 bp |
Protein | DPOGS210110-PA | 194 aa |
Genomic position | DPSCF300017 + 1251998-1252921 | |
RNAseq coverage | 1013x (Rank: top 12%) |
Annotation | ||||
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Heliconius | HMEL005908 | 2e-103 | 92.78% |   |
Bombyx | BGIBMGA000219-TA | 8e-83 | 75.25% |   |
Drosophila | Nf-YB-PA | 1e-37 | 60.63% |   |
EBI UniRef50 | UniRef50_E2B7Q9 | 7e-52 | 67.97% | Nuclear transcription factor Y subunit beta n=12 Tax=Neoptera RepID=E2B7Q9_HARSA |
NCBI RefSeq | XP_394667.2 | 7e-51 | 66.67% | PREDICTED: similar to Nuclear transcription factor Y subunit beta (Nuclear transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) [Apis mellifera] |
NCBI nr blastp | gi|307212549 | 2e-51 | 67.97% | Nuclear transcription factor Y subunit beta [Harpegnathos saltator] |
NCBI nr blastx | gi|307212549 | 3e-48 | 67.97% | Nuclear transcription factor Y subunit beta [Harpegnathos saltator] |
Group | ||||
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Gene Ontology | GO:0003677 | 1.5e-67 | DNA binding | |
GO:0043565 | 3.3e-27 | sequence-specific DNA binding | ||
GO:0005622 | 3.3e-27 | intracellular | ||
KEGG pathway | ame:411193 | 2e-50 |   | |
  | K08065 (NFYB) | maps-> | Antigen processing and presentation | |
InterPro domain | [1-142] IPR003957 | 1.5e-67 | Transcription factor, CBFA/NFYB, DNA topoisomerase | |
[47-143] IPR009072 | 9.8e-52 | Histone-fold | ||
[56-120] IPR003958 | 3.3e-27 | Transcription factor CBF/NF-Y/archaeal histone | ||
Orthology group | MCL14453 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210110-TA
ATGGAAAGTGACGATCTTGGTGGCGATTTGGTGAGATTGGATGGTGGTTGGGCCGTTGACGAGGAAACGTACGTCGTGAATACTGACGACGTTCTAGAACAAGAGGAGAACAATTCAGATTCAAATAGCGGAGGAAAAAATGTCCCCCTTAGAGAACAAGATCGTTTCCTACCCATTGCAAACATCGCAAAAATAATGAAAAGGGCTATCCCTGAAAATGGAAAGATTGCTAAAGATGCGAGGGAATGTGTACAGGAGTGTATATCTGAGTTCATATCATTTATAACAAGCGAGGCGAGTGATCGTTGTCAGATGGAAAAGAGAAAAACCATTAATGGTGAAGATGTATTGTTTGCTATGAACGCACTGGGCTTCGACAATTATGTAGAGCCCTTAAAGTTGTACTTAAAGAAGTACAGAGAAATTGTTCTATCACCTGTAACCATCAATAAGTTAAACAAAACAATTGTTTTATATGGAAGTGATGGCACACAATGTGTGGCAAACGATAATGACTCGGAGACGCAAACCCAGACAGTCATATACGGATATCCTAAAGTTATCGGAGATTTTACAATATCTTAA
>DPOGS210110-PA
MESDDLGGDLVRLDGGWAVDEETYVVNTDDVLEQEENNSDSNSGGKNVPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFITSEASDRCQMEKRKTINGEDVLFAMNALGFDNYVEPLKLYLKKYREIVLSPVTINKLNKTIVLYGSDGTQCVANDNDSETQTQTVIYGYPKVIGDFTIS-