| DPOGS210148 | ||
|---|---|---|
| Transcript | DPOGS210148-TA | 330 bp |
| Protein | DPOGS210148-PA | 109 aa |
| Genomic position | DPSCF301467 + 856-1495 | |
| RNAseq coverage | 408x (Rank: top 30%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL021260 | 1e-60 | 98.17% | |
| Bombyx | BGIBMGA002914-TA | 8e-61 | 97.25% | |
| Drosophila | AP-1gamma-PD | 1e-53 | 95.41% | |
| EBI UniRef50 | UniRef50_G7YMW3 | 2e-48 | 79.82% | AP-1 complex subunit gamma-1 n=10 Tax=Opisthokonta RepID=G7YMW3_CLOSI |
| NCBI RefSeq | XP_001812763.1 | 1e-58 | 95.41% | PREDICTED: similar to adaptin, alpha/gamma/epsilon [Tribolium castaneum] |
| NCBI nr blastp | gi|270013512 | 2e-57 | 95.41% | hypothetical protein TcasGA2_TC012117 [Tribolium castaneum] |
| NCBI nr blastx | gi|198469162 | 8e-54 | 96.30% | GA26124 [Drosophila pseudoobscura pseudoobscura] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005488 | 2.7e-42 | binding | |
| GO:0006886 | 1.3e-24 | intracellular protein transport | ||
| GO:0030117 | 1.3e-24 | membrane coat | ||
| GO:0016192 | 1.3e-24 | vesicle-mediated transport | ||
| KEGG pathway | tca:100142537 | 3e-58 | ||
| K12391 (AP1G1) | maps-> | Lysosome | ||
| InterPro domain | [2-109] IPR011989 | 2.7e-42 | Armadillo-like helical | |
| [23-109] IPR002553 | 1.3e-24 | Clathrin/coatomer adaptor, adaptin-like, N-terminal | ||
| [20-109] IPR016024 | 3.2e-20 | Armadillo-type fold | ||
| Orthology group | MCL34824 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210148-TA
ATGCAAACCCCCACTCGCCTCCGGGATCTCATCCGTCAGATACGTGCAGCTAGGACTGCTGCCGAGGAACGTAGCGTTGTGAACAAGGAGTGCGCATACATCAGATCAACCTTCAGAGAGGAGGACAGCGTTTGGAGATGTCGGAACATAGCGAAGCTTCTCTACATCCATATGCTGGGTTATCCGGCACACTTTGGCCAGCTGGAATGTCTCAAGCTGATAGCCAGTACTCGTTTCACGGACAAGAGGGTTGGTTATCTAGGAGCCATGCTTCTGCTCGACGAGCGTCAGGATGTACATCTGCTGATTACCAACTGTTTGAAGAAGTGA
>DPOGS210148-PA
MQTPTRLRDLIRQIRAARTAAEERSVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLIASTRFTDKRVGYLGAMLLLDERQDVHLLITNCLKK-