| DPOGS210429 | ||
|---|---|---|
| Transcript | DPOGS210429-TA | 669 bp |
| Protein | DPOGS210429-PA | 222 aa |
| Genomic position | DPSCF300062 - 358776-362204 | |
| RNAseq coverage | 312x (Rank: top 36%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013415 | 9e-76 | 99.25% | |
| Bombyx | BGIBMGA012644-TA | 2e-53 | 87.90% | |
| Drosophila | Rab23-PA | 5e-75 | 60.83% | |
| EBI UniRef50 | UniRef50_Q9ULC3 | 2e-68 | 56.12% | Ras-related protein Rab-23 n=78 Tax=Eukaryota RepID=RAB23_HUMAN |
| NCBI RefSeq | XP_001602379.1 | 6e-87 | 68.20% | PREDICTED: similar to rab23 [Nasonia vitripennis] |
| NCBI nr blastp | gi|307167470 | 1e-86 | 66.25% | Ras-related protein Rab-23 [Camponotus floridanus] |
| NCBI nr blastx | gi|91087349 | 8e-93 | 76.07% | PREDICTED: similar to GA15247-PA [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0007264 | 1.4e-57 | small GTPase mediated signal transduction | |
| GO:0005525 | 1.4e-57 | GTP binding | ||
| GO:0015031 | 1.4e-57 | protein transport | ||
| GO:0016020 | 1.8e-24 | membrane | ||
| GO:0007165 | 1.8e-24 | signal transduction | ||
| GO:0006184 | 1.8e-24 | GTP catabolic process | ||
| GO:0003924 | 1.8e-24 | GTPase activity | ||
| GO:0005622 | 2.8e-12 | intracellular | ||
| GO:0006886 | 1.1e-05 | intracellular protein transport | ||
| GO:0006913 | 1.1e-05 | nucleocytoplasmic transport | ||
| KEGG pathway | nvi:100118406 | 2e-86 | ||
| K06234 (RAB23) | maps-> | Hedgehog signaling pathway | ||
| InterPro domain | [1-217] IPR015593 | 1.5e-114 | Small GTPase superfamily, Rab23 | |
| [10-172] IPR003579 | 1.4e-57 | Small GTPase superfamily, Rab type | ||
| [11-169] IPR001806 | 1.7e-48 | Small GTPase superfamily | ||
| [11-162] IPR005225 | 1.7e-27 | Small GTP-binding protein domain | ||
| [7-172] IPR020849 | 1.8e-24 | Small GTPase superfamily, Ras type | ||
| [12-172] IPR003578 | 2.8e-12 | Small GTPase superfamily, Rho type | ||
| Orthology group | MCL12373 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210429-TA
ATGCGGGAAGAAGAGCTGGAGGTAGCTCTGAAGGTTGTGATCGTCGGCGACGGTGGTGTTGGCAAATCGAGTATGATCCAACGTTACTGTCGAGGCACCTTCACCAGGGATTACAAGAAAACCATCGGGGTAGACTTTCTTGAGCGGCAGATCGATATCGATGGAGAGGAGGTGAGACTGATGCTGTGGGACACGGCTGGTCAGGAGGAGTTCGACGCTATAACTAAAGCGTATTACAGAGGAGCCCACGCCTGTGTGCTGGCTTTCTCGACAACAGACAGAGACTCCTTTTTAGCTTTGCATTCATGGAAACTTAAGGTCGAGAATGAATGCGGAGAAATTCCTACAATTATAGTCCAGAATAAAATTGACCTGATGGATCAATGTGTGGTCGGACCTGACGAGGCGGAGTTAGTGGCCCGGGCGCTGGGTTGCCGCCTAATGCGTGCGTCTGTCAAAGAGGACGTGAACGTTGGCGCAGTATTTCGAGCGCTGGCCTCGCGCTGCCTCGCCGACCTGAGAGCTGACAGTGAACCGCCCCCAACAGCAACACCACTTATAGGTACATTTACAAACCATAACAGCAACGGAACTATCTTACTGAGACCTACGAAGAACCGTTCCGGCAAGAAGAAGAACGTACTCAAGAGCGCTTGCCGTATATTGTAA
>DPOGS210429-PA
MREEELEVALKVVIVGDGGVGKSSMIQRYCRGTFTRDYKKTIGVDFLERQIDIDGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVENECGEIPTIIVQNKIDLMDQCVVGPDEAELVARALGCRLMRASVKEDVNVGAVFRALASRCLADLRADSEPPPTATPLIGTFTNHNSNGTILLRPTKNRSGKKKNVLKSACRIL-