MonarchBase - Protein-coding gene

DPOGS210542
Transcript	DPOGS210542-TA	867 bp
Protein	DPOGS210542-PA	288 aa
Genomic position	DPSCF300304 - 115244-117590
RNAseq coverage	8324x (Rank: top 2%)

Annotation
*Heliconius*	HMEL006426	2e-113	96.53%
*Bombyx*	BGIBMGA013464-TA	3e-106	90.15%
*Drosophila*	sqd-PB	1e-79	72.41%
EBI UniRef50	UniRef50_Q08473	2e-77	72.41%	RNA-binding protein squid n=65 Tax=Metazoa RepID=SQD_DROME
NCBI RefSeq	NP_001037323.1	4e-103	89.16%	squid protein homologue [Bombyx mori]
NCBI nr blastp	gi\|112983696	7e-102	89.16%	squid protein homologue [Bombyx mori]
NCBI nr blastx	gi\|112983696	2e-154	89.97%	squid protein homologue [Bombyx mori]

Group
Gene Ontology	GO:0000166	2.3e-25	nucleotide binding
	GO:0003676	5.3e-25	nucleic acid binding
KEGG pathway	tca:663871	6e-88
	K03102 (SQD)	maps->	Dorso-ventral axis formation
InterPro domain	[23-121] IPR012677	2.3e-25	Nucleotide-binding, alpha-beta plait
	[43-115] IPR000504	5.3e-25	RNA recognition motif domain
Orthology group	MCL12573		Insect specific

Nucleotide sequence:

>DPOGS210542-TA
ATGGCCTCTAACGATAATTTTGCACAAGATGTTACTGAAAACCAAGTGAATGGAAATGGAGAAAACGGTGGAGGTGATGGTCAAGAACATAACAGCGCCGACGCCCCAGGACGCGATGACGACAGAAAACTTTTTGTTGGAGGGCTCAGCTGGGAAACGACAGATAAGGAATTGCGTGAACACTTCAGTGCGTATGGAGAAATTGAAAGTATCAATGTCAAGACAGATCCTAATACAGGAAGATCGCGAGGCTTCGCCTTCATTGTATTCAAAGCCCCCGATTCCATTGACAAAGTGATGGCTGCTGGAGACCACACAATTAACAATAAAAAAGTAGACCCAAAAAAAGCGAAGGCTAGGCATGGGAAGATATTTGTTGGAGGTCTTAGTAGTGAAATCTCTGATGATGAAATCAAGAACTTCTTCAGCAATTTTGGAAATATTATCGAAGTCGAGATGCCTTTCGATAAAACAAAGAACCAGAGGAAAGGTTTCTGTTTCATAACATTTGAATCCGAGCAGGTGGTCAATGAACTCCTCAAGACACCAAAACAGACCATTGCTGGCAAAGAGGTCGATGTTAAGAGGGCGACGCCTAAACCCGACGGCCCTGGAGGCATGGGCGGGCGAGGAGGACGCGGGGGCCGCGGAGCTCGCGGGGGACGGGGTGGCCGCGGCGGCTACGGCGGTCAGGGCGCCTGGGGCAACCAGGGGTATGGCGGCTATGGCTACGGTCAGGGAGGATACGGCGGCGGATACGACGGCTACGGGGGCTATGGCGGATACGGATACGACGGCTACGGGGGCTACGGTGGATACGATTACTCCGGATACCCCAATTACGGTAAACGCGGCAAGCAGCACTAG

Protein sequence:

>DPOGS210542-PA
MASNDNFAQDVTENQVNGNGENGGGDGQEHNSADAPGRDDDRKLFVGGLSWETTDKELREHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGDHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIAGKEVDVKRATPKPDGPGGMGGRGGRGGRGARGGRGGRGGYGGQGAWGNQGYGGYGYGQGGYGGGYDGYGGYGGYGYDGYGGYGGYDYSGYPNYGKRGKQH-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: