DPOGS210556 | ||
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Transcript | DPOGS210556-TA | 426 bp |
Protein | DPOGS210556-PA | 141 aa |
Genomic position | DPSCF300304 + 131935-134687 | |
RNAseq coverage | 5144x (Rank: top 2%) |
Annotation | ||||
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Heliconius | HMEL009545 | 1e-67 | 100.00% |   |
Bombyx | BGIBMGA013449-TA | 2e-67 | 100.00% |   |
Drosophila | His2Av-PA | 5e-63 | 99.17% |   |
EBI UniRef50 | UniRef50_Q71UI9 | 6e-61 | 98.36% | Histone H2A.V n=856 Tax=root RepID=H2AV_HUMAN |
NCBI RefSeq | NP_001040529.1 | 6e-66 | 100.00% | H2A histone family member V [Bombyx mori] |
NCBI nr blastp | gi|114053181 | 2e-64 | 100.00% | H2A histone family member V [Bombyx mori] |
NCBI nr blastx | gi|114053181 | 1e-64 | 100.00% | H2A histone family member V [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005634 | 6.7e-73 | nucleus | |
GO:0003677 | 6.7e-73 | DNA binding | ||
GO:0006334 | 6.7e-73 | nucleosome assembly | ||
GO:0000786 | 6.7e-73 | nucleosome | ||
KEGG pathway | cqu:CpipJ_CPIJ008494 | 1e-63 |   | |
  | K11251 (H2A) | maps-> | Systemic lupus erythematosus | |
InterPro domain | [17-137] IPR002119 | 6.7e-73 | Histone H2A | |
[19-136] IPR009072 | 4.2e-49 | Histone-fold | ||
[32-106] IPR007125 | 9.6e-23 | Histone core | ||
Orthology group | MCL12572 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210556-TA
ATGACACTGATCACTATAGCCCGAGGCTCTGAAGAGAAAGCTGGTGGTAAAGCGGGTAAAGATTCAGGCAAAGCTAAGGCTAAAGCCGTATCGAGATCAGCAAGAGCAGGATTACAGTTTCCCGTAGGCAGAATTCATCGACATCTTAAAAATAGGACAACTAGCCATGGTCGTGTAGGTGCAACCGCGGCTGTATATTCCGCAGCTATTCTTGAATATCTTACAGCCGAGGTTTTGGAGTTAGCGGGAAACGCGTCCAAGGATTTAAAGGTGAAGCGTATCACACCTCGGCATCTGCAGCTTGCCATTCGCGGAGATGAAGAGCTGGACAGCCTTATAAAGGCTACCATCGCGGGCGGCGGAGTCATCCCACACATACACAAGTCGCTTATCGGCAAGAAAGGCGGCCCCGGAGCACCCGTCTAA
>DPOGS210556-PA
MTLITIARGSEEKAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGGPGAPV-