| DPOGS210606 | ||
|---|---|---|
| Transcript | DPOGS210606-TA | 624 bp |
| Protein | DPOGS210606-PA | 207 aa |
| Genomic position | DPSCF300168 + 9916-10618 | |
| RNAseq coverage | 158x (Rank: top 52%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL005904 | 3e-75 | 69.57% | |
| Bombyx | BGIBMGA014411-TA | 7e-19 | 61.86% | |
| Drosophila | Xpac-PA | 8e-53 | 46.54% | |
| EBI UniRef50 | UniRef50_P28518 | 1e-50 | 46.54% | DNA repair protein complementing XP-A cells homolog n=14 Tax=Diptera RepID=XPA_DROME |
| NCBI RefSeq | XP_001848907.1 | 1e-55 | 50.46% | DNA-repair protein complementing XP-A cells [Culex quinquefasciatus] |
| NCBI nr blastp | gi|383856492 | 5e-58 | 51.90% | PREDICTED: DNA repair protein complementing XP-A cells homolog [Megachile rotundata] |
| NCBI nr blastx | gi|158285440 | 1e-57 | 54.21% | AGAP007566-PA [Anopheles gambiae str. PEST] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 9.4e-76 | nucleus | |
| GO:0003684 | 9.4e-76 | damaged DNA binding | ||
| GO:0006289 | 9.4e-76 | nucleotide-excision repair | ||
| GO:0000166 | 8.8e-27 | nucleotide binding | ||
| KEGG pathway | aag:AaeL_AAEL011057 | 4e-54 | ||
| K10847 (XPA) | maps-> | Nucleotide excision repair | ||
| InterPro domain | [4-207] IPR000465 | 9.4e-76 | XPA | |
| [68-142] IPR009061 | 8.8e-27 | DNA binding domain, putative | ||
| [68-120] IPR022656 | 5.4e-20 | XPA C- terminal | ||
| [35-67] IPR022652 | 3.1e-12 | Zinc finger, XPA-type, conserved site | ||
| Orthology group | MCL11858 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210606-TA
ATGCGTCCGGTGGACTCCGGCGGCGGCTTCCTGCTGGAGGCAGAGGAGGACGTGGCGACCCCCGCGCCCCGCGCCCCGCCTGCGCCCATCGTGCACCGCCCCGACCAGCCGCGCTGCCTTCACTGCGGCTCGCCCTTTCCGCAGTCCTATCTGTTGGACACCTTCGATTACAACGCCTGCGACGCCTGCAGGGACGACGAGGACAAACATGAGCTGATCACCCGGACGGAGGCCAAGAGCGAGTTCCTGCTGAAGGACTGCGACCTGGACGCTCGGCCGCCGCCGCTGAGGTGTGTAAGGCGCCGAAACCCGCACCGCGCGCGCTTCGCCGAGATGAGACTGTACCTGCGCGTGCAGGTGGAGCAGCGCGCCCTCGAGGTGTGGGGCTCCGAGGAGCAGCTACGGCGGGAACGGGAGGAGCGGGACAGGCGCCGAGAGCGAGCCGCCGACACAGCCGCCCGCCGCCGTCTCCGGGCGCTGCGGATGGACGTGCGCTCCAGCCTGTTCGACCGGACGCGAGCGGCACACGAGCACGTGTACGGCCCGGAGACCTACGACCCAGACGAGGACGTGTACCGCCGCCGATGCGAATGTGGACACGTGCAGAGTTACGAGAAGATGTAG
>DPOGS210606-PA
MRPVDSGGGFLLEAEEDVATPAPRAPPAPIVHRPDQPRCLHCGSPFPQSYLLDTFDYNACDACRDDEDKHELITRTEAKSEFLLKDCDLDARPPPLRCVRRRNPHRARFAEMRLYLRVQVEQRALEVWGSEEQLRREREERDRRRERAADTAARRRLRALRMDVRSSLFDRTRAAHEHVYGPETYDPDEDVYRRRCECGHVQSYEKM-