| DPOGS210674 | ||
|---|---|---|
| Transcript | DPOGS210674-TA | 363 bp |
| Protein | DPOGS210674-PA | 120 aa |
| Genomic position | DPSCF300013 - 1149273-1150102 | |
| RNAseq coverage | 245x (Rank: top 42%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL021601 | 9e-64 | 90.83% | |
| Bombyx | BGIBMGA006292-TA | 2e-54 | 78.33% | |
| Drosophila | RpI12-PA | 8e-34 | 58.12% | |
| EBI UniRef50 | UniRef50_Q9VD81 | 1e-31 | 58.12% | DNA-directed RNA polymerase subunit n=25 Tax=Pancrustacea RepID=Q9VD81_DROME |
| NCBI RefSeq | NP_001037548.1 | 6e-53 | 78.33% | transcription-associated zinc ribbon protein [Bombyx mori] |
| NCBI nr blastp | gi|112982786 | 2e-51 | 78.33% | transcription-associated zinc ribbon protein [Bombyx mori] |
| NCBI nr blastx | gi|112982786 | 4e-52 | 78.33% | transcription-associated zinc ribbon protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0008270 | 2.4e-17 | zinc ion binding | |
| GO:0006351 | 2.4e-17 | transcription, DNA-dependent | ||
| GO:0003676 | 2.4e-17 | nucleic acid binding | ||
| KEGG pathway | dvi:Dvir_GJ24301 | 2e-33 | ||
| K03000 (RPA12) | maps-> | Purine metabolism | ||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [80-115] IPR001222 | 2.4e-17 | Zinc finger, TFIIS-type | |
| Orthology group | MCL10370 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210674-TA
ATGGCTGACACCGGTCCATTTACAACAAGTACAGCTTTTTGTGCTAAATGTGGTTCAATATTGCCTTTGTTACAAGAATTTGGCTCTGTTAAATGCTATGCTTGCAAAGCTTCCTATGATCCAGACAGTTACAGCAATATTAAGTTCAATTACACTATACATTTTAACACAGTTTCCGCTTTGAGTAATGATAAAATTCTACATATGGACAACCCCGAAGGACCTGTTGTTGAACGAAAGTGTCCAAAATGTGGTAATGATAGAATGTCCTATGCAACGCTACAGTTGAGATCTGCAGATGAAGGACAAACTGTATTTTACACCTGTATATCTTGCAAATACAAAGAAACTGAGAATTCATAG
>DPOGS210674-PA
MADTGPFTTSTAFCAKCGSILPLLQEFGSVKCYACKASYDPDSYSNIKFNYTIHFNTVSALSNDKILHMDNPEGPVVERKCPKCGNDRMSYATLQLRSADEGQTVFYTCISCKYKETENS-